Uses of Interface
org.rcsb.cif.model.CifFile

Packages that use CifFile

Package	Description
org.rcsb.cif
org.rcsb.cif.binary
org.rcsb.cif.model
org.rcsb.cif.model.binary
org.rcsb.cif.model.builder
org.rcsb.cif.model.text
org.rcsb.cif.schema
org.rcsb.cif.schema.core
org.rcsb.cif.schema.mm
org.rcsb.cif.text

Uses of CifFile in org.rcsb.cif

Methods in org.rcsb.cif with type parameters of type CifFile

Modifier and Type	Method	Description
static <F extends CifFile, B extends CifFileBuilder> B	CifBuilder.enterFile(SchemaProvider<F,B> schemaProvider)	Start a new file with a specified schema.

Methods in org.rcsb.cif that return CifFile

Modifier and Type	Method	Description
static CifFile	CifIO.readById(String pdbId)	Read a CifFile from web.
static CifFile	CifIO.readById(String pdbId, CifOptions options)	Read a CifFile from web.
static CifFile	CifIO.readFromInputStream(InputStream inputStream)	Read a CifFile from a given InputStream.
static CifFile	CifIO.readFromInputStream(InputStream inputStream, CifOptions options)	Read a CifFile from a given InputStream.
static CifFile	CifIO.readFromPath(Path path)	Read a CifFile from a given Path.
static CifFile	CifIO.readFromPath(Path path, CifOptions options)	Read a CifFile from a given Path.
static CifFile	CifIO.readFromURL(URL url)	Read a CifFile from a given URL.
static CifFile	CifIO.readFromURL(URL url, CifOptions options)	Read a CifFile from a given URL.

Methods in org.rcsb.cif with parameters of type CifFile

Modifier and Type	Method	Description
static byte[]	CifIO.writeBinary(CifFile cifFile)	Convert a CifFile to its binary byte[] representation.
static void	CifIO.writeBinary(CifFile cifFile, Path outputFile)	Write a binary CifFile to a given Path.
static void	CifIO.writeBinary(CifFile cifFile, Path outputFile, CifOptions options)	Write a binary CifFile to a given Path.
static byte[]	CifIO.writeBinary(CifFile cifFile, CifOptions options)	Convert a CifFile to its binary byte[] representation.
static byte[]	CifIO.writeText(CifFile cifFile)	Convert a CifFile to its text byte[] representation.
static void	CifIO.writeText(CifFile cifFile, Path outputFile)	Write a text CifFile to a given Path.
static void	CifIO.writeText(CifFile cifFile, Path outputFile, CifOptions options)	Write a text CifFile to a given Path.
static byte[]	CifIO.writeText(CifFile cifFile, CifOptions options)	Convert a CifFile to its text byte[] representation.

Uses of CifFile in org.rcsb.cif.binary

Methods in org.rcsb.cif.binary that return CifFile

Modifier and Type	Method	Description
CifFile	BinaryCifReader.read(InputStream inputStream)

Methods in org.rcsb.cif.binary with parameters of type CifFile

Modifier and Type	Method	Description
byte[]	BinaryCifWriter.write(CifFile cifFile)

Uses of CifFile in org.rcsb.cif.model

Methods in org.rcsb.cif.model with type parameters of type CifFile

Modifier and Type	Method	Description
default <F extends CifFile, B extends CifFileBuilder> F	CifFile.as(SchemaProvider<F,B> schemaProvider)	Convenience method to access this file wrapped by a given schema.
default <F extends CifFile, B extends CifFileBuilder> B	CifFileBuilder.as(SchemaProvider<F,B> schemaProvider)	Specify a schema for this build operation.
default <F extends CifFile, B extends CifFileBuilder> F	CifFile.asButWithoutValidation(SchemaProvider<F,B> schemaProvider)	Convenience method to access this file wrapped by a given schema.

Methods in org.rcsb.cif.model that return CifFile

Modifier and Type	Method	Description
CifFile	CifFileBuilder.build()	Build the file described by this builder.
CifFile	CifFileBuilder.leaveFile()	Leave this builder instance.

Uses of CifFile in org.rcsb.cif.model.binary

Classes in org.rcsb.cif.model.binary that implement CifFile

Modifier and Type	Class	Description
class	BinaryFile

Uses of CifFile in org.rcsb.cif.model.builder

Methods in org.rcsb.cif.model.builder that return CifFile

Modifier and Type	Method	Description
CifFile	CifFileBuilderImpl.build()
CifFile	CifFileBuilderImpl.leaveFile()

Uses of CifFile in org.rcsb.cif.model.text

Classes in org.rcsb.cif.model.text that implement CifFile

Modifier and Type	Class	Description
class	TextFile

Uses of CifFile in org.rcsb.cif.schema

Classes in org.rcsb.cif.schema with type parameters of type CifFile

Modifier and Type	Interface	Description
interface	SchemaProvider<F extends CifFile,B extends CifFileBuilder>	A SchemaProvides wraps CifFile and CifFileBuilder instances in their schema-aware subclass.

Classes in org.rcsb.cif.schema that implement CifFile

Modifier and Type	Class	Description
class	DelegatingCifFile<B extends DelegatingBlock>	The schema is implemented by wrapping a CifFile and all block, category, and column data therein in dedicated classes that provide the schema (category names, column names, and column types) defined by some dictionary.

Fields in org.rcsb.cif.schema declared as CifFile

Modifier and Type	Field	Description
protected CifFile	DelegatingCifFile.delegate

Methods in org.rcsb.cif.schema with parameters of type CifFile

Modifier and Type	Method	Description
CifCoreFile	CifCoreSchemaProvider.createTypedFile(CifFile cifFile)
MmCifFile	MmCifSchemaProvider.createTypedFile(CifFile cifFile)
F	SchemaProvider.createTypedFile(CifFile cifFile)	Wrap a CifFile in a schema-supporting implementation of the data model.
void	CifCoreSchemaProvider.validate(CifFile cifFile)
void	MmCifSchemaProvider.validate(CifFile cifFile)
default void	SchemaProvider.validate(CifFile cifFile)	Perform an optional check if the provided argument matches this schema.

Constructors in org.rcsb.cif.schema with parameters of type CifFile

Constructor	Description
DelegatingCifFile(CifFile delegate)

Uses of CifFile in org.rcsb.cif.schema.core

Classes in org.rcsb.cif.schema.core that implement CifFile

Modifier and Type	Class	Description
class	CifCoreFile

Constructors in org.rcsb.cif.schema.core with parameters of type CifFile

Constructor	Description
CifCoreFile(CifFile delegate)

Uses of CifFile in org.rcsb.cif.schema.mm

Classes in org.rcsb.cif.schema.mm that implement CifFile

Modifier and Type	Class	Description
class	MmCifFile

Constructors in org.rcsb.cif.schema.mm with parameters of type CifFile

Constructor	Description
MmCifFile(CifFile delegate)

Uses of CifFile in org.rcsb.cif.text

Methods in org.rcsb.cif.text with parameters of type CifFile

Modifier and Type	Method	Description
byte[]	TextCifWriter.write(CifFile cifFile)