IntColumn |
EmImaging.getAcceleratingVoltage() |
A value of accelerating voltage (in kV) used for imaging.
|
IntColumn |
PdbxDepuiValidationStatusFlags.getAdpOutliersLow() |
Count of atoms with ADP (B-values) values less than 0
|
IntColumn |
IhmStartingComparativeModels.getAlignmentFileId() |
The file id corresponding to the sequence alignment of the template sequence and the comparative model sequence.
|
IntColumn |
PdbxConnectAtom.getAlignPos() |
Starting column of atom name in PDB atom field.
|
IntColumn |
IhmModelingPostProcess.getAnalysisId() |
An identifier for the post modeling analysis.
|
IntColumn |
IhmModelList.getAssemblyId() |
An identifier to the structure assembly corresponding to the model.
|
IntColumn |
IhmStructAssemblyClassLink.getAssemblyId() |
An identifier for the structural assembly.
|
IntColumn |
IhmStructAssemblyDetails.getAssemblyId() |
An identifier for the structural assembly.
|
IntColumn |
PdbxNmrChemShiftExperiment.getAssignedChemShiftListId() |
Pointer to '_pdbx_nmr_assigned_chem_shift_list.ID'
|
IntColumn |
PdbxNmrChemShiftSoftware.getAssignedChemShiftListId() |
Pointer to '_pdbx_nmr_assigned_chem_shift_list.id'
|
IntColumn |
PdbxNmrSystematicChemShiftOffset.getAssignedChemShiftListId() |
Pointer to '_pdbx_nmr_assigned_chem_shift_list.id'
|
IntColumn |
ChemicalConnBond.getAtom1() |
This data item is a pointer to _chemical_conn_atom.number in the
CHEMICAL_CONN_ATOM category.
|
IntColumn |
ValenceParam.getAtom1Valence() |
The valence (formal charge) of the first atom whose
bond-valence parameters are given in this category.
|
IntColumn |
ChemicalConnBond.getAtom2() |
This data item is a pointer to _chemical_conn_atom.number in the
CHEMICAL_CONN_ATOM category.
|
IntColumn |
ValenceParam.getAtom2Valence() |
The valence (formal charge) of the second atom whose
bond-valence parameters are given in this category.
|
IntColumn |
PdbxNmrChemShiftRef.getAtomIsotopeNumber() |
The mass number for the chemical element defined by the tag '_pdbx_nmr_chem_shift_ref.atom_type'
or any of its related tags.
|
IntColumn |
PdbxNmrSpectralDim.getAtomIsotopeNumber() |
The mass number for the specified atom.
|
IntColumn |
PdbxNmrSystematicChemShiftOffset.getAtomIsotopeNumber() |
Mass number for the atom defined by the '.Atom_type' tag with a systematic
chemical shift offset.
|
IntColumn |
PdbxVirtualBond.getAtomSiteAuthSeqId2() |
An optional identifier of the second of the two atom sites that
define the bond specified by _pdbx_virtual_bond.dist.
|
IntColumn |
GeomAngle.getAtomSiteLabelSeqId1() |
An optional identifier of the first of the three atom sites that
define the angle.
|
IntColumn |
GeomBond.getAtomSiteLabelSeqId1() |
An optional identifier of the first of the two atom sites that
define the bond.
|
IntColumn |
GeomContact.getAtomSiteLabelSeqId1() |
An optional identifier of the first of the two atom sites that
define the contact.
|
IntColumn |
GeomTorsion.getAtomSiteLabelSeqId1() |
An optional identifier of the first of the four atom sites that
define the torsion angle.
|
IntColumn |
PdbxVirtualAngle.getAtomSiteLabelSeqId1() |
An optional identifier of the first of the three atom sites that
define the angle specified by _pdbx_virtual_angle.value.
|
IntColumn |
PdbxVirtualBond.getAtomSiteLabelSeqId1() |
An optional identifier of the first of the two atom sites that
define the bond specified by _pdbx_virtual_bond.dist.
|
IntColumn |
PdbxVirtualTorsion.getAtomSiteLabelSeqId1() |
An optional identifier of the first of the four atom sites that
define the torsion angle specified by _pdbx_virtual_torsion.value.
|
IntColumn |
GeomAngle.getAtomSiteLabelSeqId2() |
An optional identifier of the second of the three atom sites
that define the angle.
|
IntColumn |
GeomBond.getAtomSiteLabelSeqId2() |
An optional identifier of the second of the two atom sites that
define the bond.
|
IntColumn |
GeomContact.getAtomSiteLabelSeqId2() |
An optional identifier of the second of the two atom sites that
define the contact.
|
IntColumn |
GeomTorsion.getAtomSiteLabelSeqId2() |
An optional identifier of the second of the four atom sites that
define the torsion angle.
|
IntColumn |
PdbxVirtualAngle.getAtomSiteLabelSeqId2() |
An optional identifier of the second of the three atom sites
that define the angle specified by _pdbx_virtual_angle.value.
|
IntColumn |
PdbxVirtualBond.getAtomSiteLabelSeqId2() |
An optional identifier of the second of the two atom sites that
define the bond specified by _pdbx_virtual_bond.dist.
|
IntColumn |
PdbxVirtualTorsion.getAtomSiteLabelSeqId2() |
An optional identifier of the second of the four atom sites that
define the torsion angle specified by _pdbx_virtual_torsion.value.
|
IntColumn |
GeomAngle.getAtomSiteLabelSeqId3() |
An optional identifier of the third of the three atom sites that
define the angle.
|
IntColumn |
GeomTorsion.getAtomSiteLabelSeqId3() |
An optional identifier of the third of the four atom sites that
define the torsion angle.
|
IntColumn |
PdbxVirtualAngle.getAtomSiteLabelSeqId3() |
An optional identifier of the third of the three atom sites that
define the angle specified by _pdbx_virtual_angle.value.
|
IntColumn |
PdbxVirtualTorsion.getAtomSiteLabelSeqId3() |
An optional identifier of the third of the four atom sites that
define the torsion angle specified by _pdbx_virtual_torsion.value.
|
IntColumn |
GeomTorsion.getAtomSiteLabelSeqId4() |
An optional identifier of the fourth of the four atom sites that
define the torsion angle.
|
IntColumn |
PdbxVirtualTorsion.getAtomSiteLabelSeqId4() |
An optional identifier of the fourth of the four atom sites that
define the torsion angle specified by _pdbx_virtual_torsion.value.
|
IntColumn |
GeomHbond.getAtomSiteLabelSeqIdA() |
An optional identifier of the acceptor-atom site that defines
the hydrogen bond.
|
IntColumn |
GeomHbond.getAtomSiteLabelSeqIdD() |
An optional identifier of the donor-atom site that defines
the hydrogen bond.
|
IntColumn |
GeomHbond.getAtomSiteLabelSeqIdH() |
An optional identifier of the hydrogen-atom site that defines
the hydrogen bond.
|
IntColumn |
AtomSite.getAttachedHydrogens() |
The number of hydrogen atoms attached to the atom at this site
excluding any hydrogen atoms for which coordinates (measured or
calculated) are given.
|
IntColumn |
PdbxDepositGroupIndex.getAuthFileSize() |
The file size (bytes) for this data file within the collection.
|
IntColumn |
AtomSite.getAuthSeqId() |
An alternative identifier for _atom_site.label_seq_id that
may be provided by an author in order to match the identification
used in the publication that describes the structure.
|
IntColumn |
PdbxStructModResidue.getAuthSeqId() |
Part of the identifier for the modified polymer component.
|
IntColumn |
PdbxStructRefSeqDifDepositorInfo.getAuthSeqId() |
The monomer position in the author provided sequence.
|
IntColumn |
PdbxNmrEnsemble.getAverageConstraintsPerResidue() |
The average number of constraints per residue for the ensemble
|
IntColumn |
PdbxNmrEnsemble.getAverageConstraintViolationsPerResidue() |
The average number of constraint violations on a per residue basis for
the ensemble.
|
IntColumn |
EmFinalClassification.getAvgNumImagesPerClass() |
The average number of images per class in the final 2D classification
|
IntColumn |
StructConf.getBegAuthSeqId() |
A component of the identifier for the residue at which the
conformation segment begins.
|
IntColumn |
StructSheetRange.getBegAuthSeqId() |
A component of the identifier for the residue at which the
beta-sheet range begins.
|
IntColumn |
PdbxStructRefSeqFeatureProp.getBegDbSeqId() |
The begining monomer sequence position
in the referenced database entry.
|
IntColumn |
PdbxEntityPolyDomain.getBeginSeqNum() |
The value of _pdbx_entity_poly_domain.begin_seq_num identifies
the sequence position of the beginning of the domain.
|
IntColumn |
PdbxDomainRange.getBegLabelSeqId() |
A component of the identifier for the monomer at which this
segment of the domain begins.
|
IntColumn |
PdbxRefineTlsGroup.getBegLabelSeqId() |
A component of the identifier for the residue at which the
TLS fragment range begins.
|
IntColumn |
PdbxSequenceRange.getBegLabelSeqId() |
A component of the identifier for the monomer at which this
segment of the sequence range begins.
|
IntColumn |
PdbxStructGroupComponentRange.getBegLabelSeqId() |
Part of the identifier for the component range in this group assignment.
|
IntColumn |
StructConf.getBegLabelSeqId() |
A component of the identifier for the residue at which the
conformation segment begins.
|
IntColumn |
StructNcsDomLim.getBegLabelSeqId() |
A component of the identifier for the monomer at which this
segment of the domain begins.
|
IntColumn |
StructSheetRange.getBegLabelSeqId() |
A component of the identifier for the residue at which the
beta-sheet range begins.
|
IntColumn |
PdbxEntitySrcGenDepositorInfo.getBegSeqNum() |
The beginning polymer sequence position for the polymer section corresponding
to this source.
|
IntColumn |
EmImaging.getCalibratedMagnification() |
The magnification value obtained for a known standard just
prior to, during or just after the imaging experiment.
|
IntColumn |
PdbxDccGeometry.getCbetaDeviations() |
Number of Cbeta deviations >0.25A.
|
IntColumn |
IhmGeometricObjectSphere.getCenterId() |
Identifier to the description of the center.
|
IntColumn |
IhmGeometricObjectTorus.getCenterId() |
Identifier to the description of the center.
|
IntColumn |
ChemCompAtom.getCharge() |
The net integer charge assigned to this atom.
|
IntColumn |
ChemicalConnAtom.getCharge() |
The net integer charge assigned to this atom.
|
IntColumn |
PdbxChemCompModelAtom.getCharge() |
The net integer charge assigned to this atom.
|
IntColumn |
PdbxConnectAtom.getCharge() |
Charge
|
IntColumn |
IhmPolyProbeConjugate.getChemCompDescriptorId() |
The chemical descriptor of the polymeric residue conjugate with the probe.
|
IntColumn |
AtomSite.getChemicalConnNumber() |
This data item is a pointer to _chemical_conn_atom.number in the
CHEMICAL_CONN_ATOM category.
|
IntColumn |
PdbxNmrAssignedChemShiftList.getChemShiftReferenceId() |
Pointer to '_pdbx_nmr_chem_shift_reference.id'
|
IntColumn |
PdbxNmrChemShiftRef.getChemShiftReferenceId() |
Pointer to '_pdbx_nmr_chem_shift_reference.id'
|
IntColumn |
PdbxHelicalSymmetry.getCircularSymmetry() |
Rotational n-fold symmetry about the helical axis.
|
IntColumn |
PdbxHelicalSymmetryDepositorInfo.getCircularSymmetry() |
Rotational n-fold symmetry about the helical axis.
|
IntColumn |
PdbxPointSymmetry.getCircularSymmetry() |
Rotational n-fold C and D point symmetry.
|
IntColumn |
PdbxPointSymmetryDepositorInfo.getCircularSymmetry() |
Rotational n-fold C and D point symmetry.
|
IntColumn |
IhmStructAssemblyClassLink.getClassId() |
An identifier for the structural assembly class.
|
IntColumn |
PdbxColumninfo.getColumnSerialNo() |
SQL column serial number.
|
IntColumn |
PdbxLinkedEntityLinkList.getComponent1() |
The entity component identifier for the first of two entities containing the linkage.
|
IntColumn |
PdbxReferenceEntityLink.getComponent1() |
The entity component identifier for the first of two entities containing the linkage.
|
IntColumn |
PdbxLinkedEntityLinkList.getComponent2() |
The entity component identifier for the second of two entities containing the linkage.
|
IntColumn |
PdbxReferenceEntityLink.getComponent2() |
The entity component identifier for the second of two entities containing the linkage.
|
IntColumn |
PdbxLinkedEntityList.getComponentId() |
The component number of this entity within the molecule.
|
IntColumn |
PdbxReferenceEntityList.getComponentId() |
The component number of this entity within the molecule.
|
IntColumn |
PdbxReferenceEntityPolyLink.getComponentId() |
The entity component identifier entity containing the linkage.
|
IntColumn |
PdbxNmrAssignedChemShiftList.getConditionsId() |
Pointer to '_pdbx_nmr_exptl_sample_conditions.conditions_id'
|
IntColumn |
PdbxNmrSpectralPeakList.getConditionsId() |
Pointer to '_pdbx_nmr_exptl_sample_conditions.conditions_id'
|
IntColumn |
PdbxNmrEnsemble.getConformersCalculatedTotalNumber() |
The total number of conformer (models) that were calculated in the final round.
|
IntColumn |
PdbxNmrEnsemble.getConformersSubmittedTotalNumber() |
The number of conformer (models) that are submitted for the ensemble.
|
IntColumn |
PdbxNmrConstraintFile.getConstraintNumber() |
Number of constraints of this type and subtype in the file.
|
IntColumn |
DiffrnRefln.getCountsBg1() |
The diffractometer counts for the measurement of the background
before the peak.
|
IntColumn |
DiffrnRefln.getCountsBg2() |
The diffractometer counts for the measurement of the background
after the peak.
|
IntColumn |
DiffrnRefln.getCountsNet() |
The diffractometer counts for the measurement of net counts after
background removal.
|
IntColumn |
DiffrnRefln.getCountsPeak() |
The diffractometer counts for the measurement of counts for the
peak scan or position.
|
IntColumn |
DiffrnRefln.getCountsTotal() |
The diffractometer counts for the measurement of total counts
(background plus peak).
|
IntColumn |
PdbxSerialCrystallographyDataReduction.getCrystalHits() |
For experiments in which samples are provided in a
continuous stream, the total number of frames collected
in which the crystal was hit.
|
IntColumn |
Exptl.getCrystalsNumber() |
The total number of crystals used in the measurement of
intensities.
|
IntColumn |
PdbxSerialCrystallographySampleDeliveryFixedTarget.getCrystalsPerUnit() |
The number of crystals per dropplet or pore in fixed target
|
IntColumn |
PdbxStructPackGen.getCrystalType() |
Crystal type
|
IntColumn |
Citation.getDatabaseIdMedline() |
Accession number used by Medline to categorize a specific
bibliographic entry.
|
IntColumn |
PdbxNmrUpload.getDataFileId() |
Unique code assigned to the file being uploaded by the depositor and that
contains data that will be incorporated into this entry.
|
IntColumn |
IhmModelingPostProcess.getDatasetGroupId() |
An index for the dataset group being used in the post modeling process.
|
IntColumn |
IhmModelingProtocolDetails.getDatasetGroupId() |
An index for the dataset group being used in the modeling protocol.
|
IntColumn |
Ihm2demClassAverageRestraint.getDatasetListId() |
Identifier to the 2dem class average dataset.
|
IntColumn |
Ihm3demRestraint.getDatasetListId() |
Identifier to the 3DEM map used.
|
IntColumn |
IhmCrossLinkList.getDatasetListId() |
Identifier to the crosslinking dataset.
|
IntColumn |
IhmDatasetExternalReference.getDatasetListId() |
Identifier to the dataset list used in the I/H modeling.
|
IntColumn |
IhmDatasetGroupLink.getDatasetListId() |
An identifier for the dataset.
|
IntColumn |
IhmDatasetRelatedDbReference.getDatasetListId() |
Identifier to the dataset list used in the IHM modeling.
|
IntColumn |
IhmDerivedAngleRestraint.getDatasetListId() |
Identifier to the input data from which the angle restraint is derived.
|
IntColumn |
IhmDerivedDihedralRestraint.getDatasetListId() |
Identifier to the input data from which the dihedral restraint is derived.
|
IntColumn |
IhmDerivedDistanceRestraint.getDatasetListId() |
Identifier to the input data from which the distance restraint is derived.
|
IntColumn |
IhmEprRestraint.getDatasetListId() |
Identifier to the EPR data used.
|
IntColumn |
IhmGeometricObjectDistanceRestraint.getDatasetListId() |
Identifier to the input data from which the restraint is derived.
|
IntColumn |
IhmHdxRestraint.getDatasetListId() |
Identifier to the HDX input data from which the restraints are derived.
|
IntColumn |
IhmHydroxylRadicalFpRestraint.getDatasetListId() |
Identifier to the hydroxyl radical footprinting dataset.
|
IntColumn |
IhmInterfaceResidueFeature.getDatasetListId() |
Identifier to the input data from which the interface residue is determined.
|
IntColumn |
IhmLigandProbe.getDatasetListId() |
An identifier for the experimental dataset corresponding
to the ligand probe.
|
IntColumn |
IhmPolyProbeConjugate.getDatasetListId() |
An identifier for the experimental dataset corresponding to the
polymer-probe conjugate.
|
IntColumn |
IhmPredictedContactRestraint.getDatasetListId() |
Identifier to the predicted contacts dataset.
|
IntColumn |
IhmSasRestraint.getDatasetListId() |
Identifier to the SAS data used.
|
IntColumn |
IhmStartingModelDetails.getDatasetListId() |
Identifier to the starting model (comparative, experimental or integrative)
used as input in the integrative modeling.
|
IntColumn |
IhmRelatedDatasets.getDatasetListIdDerived() |
The dataset list id corresponding to the derived dataset.
|
IntColumn |
IhmRelatedDatasets.getDatasetListIdPrimary() |
The primary dataset list id from which the corresponding derived dataset is obtained.
|
IntColumn |
PdbxSupportingExpDataSet.getDataVersionMajor() |
The major version on data of the experimental data content on which this entry depends.
|
IntColumn |
PdbxSupportingExpDataSet.getDataVersionMinor() |
The major version on data of the experimental data content on which this entry depends.
|
IntColumn |
PdbxStructRefSeqDepositorInfo.getDbAlignBeg() |
The sequence position in the referenced database entry
at which the alignment begins.
|
IntColumn |
StructRefSeq.getDbAlignBeg() |
The sequence position in the referenced database entry
at which the alignment begins.
|
IntColumn |
PdbxStructRefSeqDepositorInfo.getDbAlignEnd() |
The sequence position in the referenced database entry
at which the alignment ends.
|
IntColumn |
StructRefSeq.getDbAlignEnd() |
The sequence position in the referenced database entry
at which the alignment ends.
|
IntColumn |
IhmStartingModelSeqDif.getDbSeqId() |
The corresponding residue index of the database starting model.
|
IntColumn |
PdbxStructRefSeqDeletion.getDbSeqId() |
This data item is the database sequence numbering of the deleted
residue
|
IntColumn |
PdbxStructRefSeqDifDepositorInfo.getDbSeqId() |
The monomer position in the referenced database entry.
|
IntColumn |
EmImageScans.getDimensionHeight() |
height of scanned image
|
IntColumn |
EmMap.getDimensionsCol() |
The number of columns in the map.
|
IntColumn |
EmMap.getDimensionsRow() |
The number of rows in the map.
|
IntColumn |
EmMap.getDimensionsSec() |
The number of sections in the map.
|
IntColumn |
EmImageScans.getDimensionWidth() |
width of scanned image
|
IntColumn |
PdbxNmrConstraints.getDisulfideBondConstraintsTotalCount() |
The total number of disulfide bond constraints used in the final
structure calculation.
|
IntColumn |
EmFocusedIonBeam.getDoseRate() |
ions per sq centimetre per second
|
IntColumn |
PdbxSerialCrystallographyDataReduction.getDropletHits() |
For experiments in which samples are provided in a
continuous stream, the total number of frames collected
in which a droplet was hit.
|
IntColumn |
EmFocusedIonBeam.getDuration() |
Milling time in seconds (is seconds most appropriate unit?)
|
IntColumn |
IhmOrderedEnsemble.getEdgeId() |
An identifier that describes an edge in a directed graph, which
represents an ordered ensemble.
|
IntColumn |
PdbxNmrSpectralDim.getEncodedSourceDimensionId() |
Pointer to '_pdbx_nmr_spectral_dim.id'.
|
IntColumn |
StructConf.getEndAuthSeqId() |
A component of the identifier for the residue at which the
conformation segment ends.
|
IntColumn |
StructSheetRange.getEndAuthSeqId() |
A component of the identifier for the residue at which the
beta-sheet range ends.
|
IntColumn |
PdbxStructRefSeqFeatureProp.getEndDbSeqId() |
The terminal monomer sequence position
in the referenced database entry.
|
IntColumn |
PdbxDomainRange.getEndLabelSeqId() |
A component of the identifier for the monomer at which this
segment of the domain ends.
|
IntColumn |
PdbxRefineTlsGroup.getEndLabelSeqId() |
A component of the identifier for the residue at which the
TLS fragment range ends.
|
IntColumn |
PdbxSequenceRange.getEndLabelSeqId() |
A component of the identifier for the monomer at which this
segment of the sequence range ends.
|
IntColumn |
PdbxStructGroupComponentRange.getEndLabelSeqId() |
Part of the identifier for the component range in this group assignment.
|
IntColumn |
StructConf.getEndLabelSeqId() |
A component of the identifier for the residue at which the
conformation segment ends.
|
IntColumn |
StructNcsDomLim.getEndLabelSeqId() |
A component of the identifier for the monomer at which this
segment of the domain ends.
|
IntColumn |
StructSheetRange.getEndLabelSeqId() |
A component of the identifier for the residue at which the
beta-sheet range ends.
|
IntColumn |
PdbxConstructFeature.getEndSeq() |
The sequence position at which the feature ends
|
IntColumn |
PdbxEntityPolyDomain.getEndSeqNum() |
The value of _pdbx_entity_poly_domain.begin_seq_num identifies
the sequence position of the end of the domain.
|
IntColumn |
PdbxEntitySrcGenDepositorInfo.getEndSeqNum() |
The ending polymer sequence position for the polymer section corresponding
to this source.
|
IntColumn |
IhmEnsembleInfo.getEnsembleFileId() |
A reference to the external file containing the structural models
in the ensemble.
|
IntColumn |
IhmCrossLinkResult.getEnsembleId() |
An identifier for the ensemble whose results are described.
|
IntColumn |
IhmEnsembleInfo.getEnsembleId() |
A unique id for the ensemble.
|
IntColumn |
IhmEnsembleSubSample.getEnsembleId() |
The ensemble identifier corresponding to the sub sample.
|
IntColumn |
IhmGaussianObjEnsemble.getEnsembleId() |
The ensemble id corresponding to the gaussian object.
|
IntColumn |
IhmLocalizationDensityFiles.getEnsembleId() |
The ensemble identifier for the ensemble, for which the localization density is provided.
|
IntColumn |
PdbxEntityBranchLink.getEntityBranchListNum1() |
The component number for the first component making the linkage.
|
IntColumn |
PdbxEntityBranchLink.getEntityBranchListNum2() |
The component number for the second component making the linkage.
|
IntColumn |
PdbxEntityPolyCompLinkList.getEntityCompNum1() |
The component number for the first component making the linkage.
|
IntColumn |
PdbxEntityPolyCompLinkList.getEntityCompNum2() |
The component number for the second component making the linkage.
|
IntColumn |
PdbxChemCompSubcomponentStructConn.getEntityId1() |
The entity identifier for the first atom in the interaction.
|
IntColumn |
PdbxChemCompSubcomponentStructConn.getEntityId2() |
The entity identifier for the second atom in the interaction.
|
IntColumn |
IhmLocalizationDensityFiles.getEntityPolySegmentId() |
The identifier for the polymeric segment corresponding to this
localization density.
|
IntColumn |
IhmModelRepresentationDetails.getEntityPolySegmentId() |
The identifier for the polymeric segment in the representation.
|
IntColumn |
IhmStartingModelDetails.getEntityPolySegmentId() |
The identifier for the polymeric segment modeled using this starting model.
|
IntColumn |
IhmStructAssemblyDetails.getEntityPolySegmentId() |
The identifier for the polymeric segment in the assembly.
|
IntColumn |
EntityLink.getEntitySeqNum1() |
For a polymer entity, the sequence number in the first of
the two entities containing the link.
|
IntColumn |
PdbxLinkedEntityLinkList.getEntitySeqNum1() |
For a polymer entity, the sequence number in the first of
the two entities containing the linkage.
|
IntColumn |
PdbxReferenceEntityLink.getEntitySeqNum1() |
For a polymer entity, the sequence number in the first of
the two entities containing the linkage.
|
IntColumn |
PdbxReferenceEntityPolyLink.getEntitySeqNum1() |
For a polymer entity, the sequence number in the first of
the two components making the linkage.
|
IntColumn |
EntityLink.getEntitySeqNum2() |
For a polymer entity, the sequence number in the second of
the two entities containing the link.
|
IntColumn |
PdbxLinkedEntityLinkList.getEntitySeqNum2() |
For a polymer entity, the sequence number in the second of
the two entities containing the linkage.
|
IntColumn |
PdbxReferenceEntityLink.getEntitySeqNum2() |
For a polymer entity, the sequence number in the second of
the two entities containing the linkage.
|
IntColumn |
PdbxReferenceEntityPolyLink.getEntitySeqNum2() |
For a polymer entity, the sequence number in the second of
the two components making the linkage.
|
IntColumn |
PdbxNmrChemShiftExperiment.getExperimentId() |
Pointer to '_pdbx_nmr_exptl.experiment.id'
|
IntColumn |
PdbxNmrSpectralPeakList.getExperimentId() |
Pointer to '_pdbx_nmr_exptl.experiment_id'
|
IntColumn |
ExptlCrystal.getF000() |
The effective number of electrons in the crystal unit cell
contributing to F(000).
|
IntColumn |
NdbStructConfNa.getFeatureCount() |
This data item counts the number of occurences of
this feature in this entry.
|
IntColumn |
NdbStructFeatureNa.getFeatureCount() |
This data item counts the number of occurences of
this feature in this entry.
|
IntColumn |
IhmFeatureList.getFeatureId() |
A unique identifier for the feature.
|
IntColumn |
IhmGeometricObjectDistanceRestraint.getFeatureId() |
Identifier to the molecular feature involved in the distance restraint.
|
IntColumn |
IhmHdxRestraint.getFeatureId() |
Identifier for the peptide / residue feature.
|
IntColumn |
IhmInterfaceResidueFeature.getFeatureId() |
Identifier for the interface residue feature that defines the interface residue.
|
IntColumn |
IhmNonPolyFeature.getFeatureId() |
An identifier for the selected non-polymer feature.
|
IntColumn |
IhmPolyAtomFeature.getFeatureId() |
An identifier for the selected atom feature.
|
IntColumn |
IhmPolyResidueFeature.getFeatureId() |
An identifier for the selected residue / residue range feature.
|
IntColumn |
IhmPseudoSiteFeature.getFeatureId() |
The feature identifier corresponding to this pseudo site.
|
IntColumn |
PdbxStructRefSeqFeature.getFeatureId() |
Uniquely identfies a sequence feature in
the STRUCT_REF_SEQ_FEATURE category.
|
IntColumn |
PdbxStructRefSeqFeatureProp.getFeatureId() |
This data item is a pointer to _pdbx_struct_ref_seq_feature.feature_id in
the STRUCT_REF_SEQ_FEATURE category.
|
IntColumn |
IhmDerivedAngleRestraint.getFeatureId1() |
The feature identifier for the first partner in the angle restraint.
|
IntColumn |
IhmDerivedDihedralRestraint.getFeatureId1() |
The feature identifier for the first partner in the dihedral restraint.
|
IntColumn |
IhmDerivedDistanceRestraint.getFeatureId1() |
The feature identifier for the first partner in the distance restraint.
|
IntColumn |
IhmDerivedAngleRestraint.getFeatureId2() |
The feature identifier for the second partner in the angle restraint.
|
IntColumn |
IhmDerivedDihedralRestraint.getFeatureId2() |
The feature identifier for the second partner in the dihedral restraint.
|
IntColumn |
IhmDerivedDistanceRestraint.getFeatureId2() |
The feature identifier for the second partner in the distance restraint.
|
IntColumn |
IhmDerivedAngleRestraint.getFeatureId3() |
The feature identifier for the third partner in the angle restraint.
|
IntColumn |
IhmDerivedDihedralRestraint.getFeatureId3() |
The feature identifier for the third partner in the dihedral restraint.
|
IntColumn |
IhmDerivedDihedralRestraint.getFeatureId4() |
The feature identifier for the fourth partner in the dihedral restraint.
|
IntColumn |
IhmDatasetExternalReference.getFileId() |
The file id corresponding to this external data file.
|
IntColumn |
IhmEnsembleSubSample.getFileId() |
A reference to the external file containing the structural models
in the sub sample.
|
IntColumn |
IhmLocalizationDensityFiles.getFileId() |
The file id for the externally stored localization density file.
|
IntColumn |
PdbxDepuiUpload.getFileSize() |
The size of the uploaded file in bytes.
|
IntColumn |
EmFocusedIonBeam.getFinalThickness() |
Final sample thickness
|
IntColumn |
EmUltramicrotomy.getFinalThickness() |
Final thickness of the sectioned sample, in nanometers
|
IntColumn |
IhmEprRestraint.getFittingSoftwareId() |
Identifier pointing to the software used for fitting.
|
IntColumn |
IhmStartingModelCoord.getFormalCharge() |
The formal charge corresponding to this coordinate position.
|
IntColumn |
PdbxConnect.getFormalCharge() |
Formal charge if nonzero
|
IntColumn |
Cell.getFormulaUnitsZ() |
The number of the formula units in the unit cell as specified
by _chemical_formula.structural, _chemical_formula.moiety or
_chemical_formula.sum.
|
IntColumn |
PdbxSerialCrystallographyDataReduction.getFrameHits() |
For experiments in which samples are provided in a
continuous stream, the total number of data frames collected
in which the sample was hit.
|
IntColumn |
PdbxSerialCrystallographyDataReduction.getFramesFailedIndex() |
For experiments in which samples are provided in a
continuous stream, the total number of data frames collected
that contained a "hit" but failed to index.
|
IntColumn |
PdbxSerialCrystallographyDataReduction.getFramesIndexed() |
For experiments in which samples are provided in a
continuous stream, the total number of data frames collected
that were indexed.
|
IntColumn |
EmImageScans.getFramesPerImage() |
Total number of time-slice (movie) frames taken per image.
|
IntColumn |
PdbxSerialCrystallographyDataReduction.getFramesTotal() |
The total number of data frames collected for this
data set.
|
IntColumn |
PdbxDccDensity.getFreeSetCount() |
The number of unique reflections for calculating Rfree
(testing set) reported in the model file.
|
IntColumn |
PdbxReferenceLinkedEntityLink.getFromListId() |
The value of _pdbx_reference_linked_entity_link.from_list_id is a reference
_pdbx_reference_linked_entity_comp_list.list_id in the pdbx_reference_linked_entity_comp_list
category.
|
IntColumn |
PdbxEntitySrcGenDepositorInfo.getGeneSrcNcbiTaxonomyId() |
NCBI Taxonomy identifier for the gene source organism.
|
IntColumn |
EmSampleSupport.getGridMeshSize() |
The value of the mesh size (divisions per inch) of the em grid.
|
IntColumn |
IhmCrossLinkList.getGroupId() |
An identifier for a set of ambiguous crosslink restraints.
|
IntColumn |
IhmCrossLinkRestraint.getGroupId() |
An identifier for a set of ambiguous cross-links.
|
IntColumn |
IhmDatasetGroupLink.getGroupId() |
An identifier for the dataset group.
|
IntColumn |
IhmDerivedAngleRestraint.getGroupId() |
An identifier to group the angle restraints.
|
IntColumn |
IhmDerivedDihedralRestraint.getGroupId() |
An identifier to group the dihedral restraints.
|
IntColumn |
IhmDerivedDistanceRestraint.getGroupId() |
An identifier to group the distance restraints.
|
IntColumn |
IhmHydroxylRadicalFpRestraint.getGroupId() |
An identifier to group the hydroxyl radical footprinting restraints.
|
IntColumn |
IhmModelGroupLink.getGroupId() |
An identifier for the structural model group.
|
IntColumn |
IhmPredictedContactRestraint.getGroupId() |
An identifier to group the predicted contacts.
|
IntColumn |
NdbStructNaBasePair.getHbondType12() |
Base pair classification of Westhoff and Leontis.
|
IntColumn |
NdbStructNaBasePair.getHbondType28() |
Base pair classification of Saenger
|
IntColumn |
PdbxEntitySrcGenDepositorInfo.getHostOrgNcbiTaxonomyId() |
NCBI Taxonomy identifier for the expression system organism.
|
IntColumn |
PdbxNmrConstraints.getHydrogenBondConstraintsTotalCount() |
The total number of hydrogen bond constraints used in the final
structure calculation.
|
IntColumn |
AtomSite.getId() |
The value of _atom_site.id must uniquely identify a record in the
ATOM_SITE list.
|
IntColumn |
DatabasePDBCaveat.getId() |
A unique identifier for the PDB caveat record.
|
IntColumn |
DatabasePDBRemark.getId() |
A unique identifier for the PDB remark record.
|
IntColumn |
EmMap.getId() |
Unique id for the EMD_MAP category.
|
IntColumn |
EmSingleParticleEntity.getId() |
Unique category label.
|
IntColumn |
Ihm2demClassAverageFitting.getId() |
A unique identifier for the 2dem class average fitting data.
|
IntColumn |
Ihm2demClassAverageRestraint.getId() |
A unique identifier for the 2dem class average.
|
IntColumn |
Ihm3demRestraint.getId() |
A unique identifier for the 3DEM restraint description.
|
IntColumn |
IhmChemicalComponentDescriptor.getId() |
An identifier for the chemical descriptor.
|
IntColumn |
IhmCrossLinkList.getId() |
A unique identifier for the cross link restraint.
|
IntColumn |
IhmCrossLinkPseudoSite.getId() |
A unique identifier for this category.
|
IntColumn |
IhmCrossLinkRestraint.getId() |
A unique identifier for the cross link record.
|
IntColumn |
IhmCrossLinkResult.getId() |
A unique identifier for the restraint/ensemble combination.
|
IntColumn |
IhmCrossLinkResultParameters.getId() |
A unique identifier for the restraint/model combination.
|
IntColumn |
IhmDatasetExternalReference.getId() |
A unique identifier for the external data.
|
IntColumn |
IhmDatasetGroup.getId() |
A unique identifier for the dataset group.
|
IntColumn |
IhmDatasetList.getId() |
A unique identifier for the dataset.
|
IntColumn |
IhmDatasetRelatedDbReference.getId() |
A unique identifier for the related database entry.
|
IntColumn |
IhmDataTransformation.getId() |
A unique identifier for the transformation.
|
IntColumn |
IhmDerivedAngleRestraint.getId() |
A unique identifier for the derived angle restraint.
|
IntColumn |
IhmDerivedDihedralRestraint.getId() |
A unique identifier for the derived dihedral restraint.
|
IntColumn |
IhmDerivedDistanceRestraint.getId() |
A unique identifier for the derived distance restraint.
|
IntColumn |
IhmEnsembleSubSample.getId() |
A unique id for the ensemble sub sample.
|
IntColumn |
IhmEntityPolySegment.getId() |
A unique identifier for the polymeric segment.
|
IntColumn |
IhmExternalFiles.getId() |
A unique identifier for each external file.
|
IntColumn |
IhmGaussianObjEnsemble.getId() |
A unique identifier for this gaussian object.
|
IntColumn |
IhmGaussianObjSite.getId() |
A unique identifier for this gaussian object in the model.
|
IntColumn |
IhmGeometricObjectCenter.getId() |
A unique identifier for the center.
|
IntColumn |
IhmGeometricObjectDistanceRestraint.getId() |
A unique id for the geometric object distance restraint.
|
IntColumn |
IhmGeometricObjectTransformation.getId() |
A unique identifier for the transformation.
|
IntColumn |
IhmHdxRestraint.getId() |
A unique identifier for the category.
|
IntColumn |
IhmHydroxylRadicalFpRestraint.getId() |
A unique identifier for the hydroxyl radical footprinting restraint.
|
IntColumn |
IhmLocalizationDensityFiles.getId() |
A unique identifier.
|
IntColumn |
IhmModelGroup.getId() |
A unique identifier for a collection or group of structural models.
|
IntColumn |
IhmModelingPostProcess.getId() |
A unique identifier for the post modeling analysis/step combination.
|
IntColumn |
IhmModelingProtocol.getId() |
A unique identifier for the modeling protocol.
|
IntColumn |
IhmModelingProtocolDetails.getId() |
A unique identifier for the modeling protocol/step combination.
|
IntColumn |
IhmModelRepresentation.getId() |
A unique identifier for the model representation.
|
IntColumn |
IhmModelRepresentationDetails.getId() |
A unique identifier for the category.
|
IntColumn |
IhmModelRepresentative.getId() |
A unique identifier for the representative of the model group.
|
IntColumn |
IhmPolyProbeConjugate.getId() |
A unique identifier for the category.
|
IntColumn |
IhmPolyProbePosition.getId() |
A unique identifier for the category.
|
IntColumn |
IhmPredictedContactRestraint.getId() |
A unique identifier for the predicted contact restraint.
|
IntColumn |
IhmPseudoSite.getId() |
An identifier to the pseudo site.
|
IntColumn |
IhmResiduesNotModeled.getId() |
A unique identifier for the category.
|
IntColumn |
IhmSasRestraint.getId() |
A unique identifier for the SAS restraint description.
|
IntColumn |
IhmSphereObjSite.getId() |
A unique identifier for this pseudo atom / sphere object.
|
IntColumn |
IhmStartingComparativeModels.getId() |
A unique identifier for the starting comparative model.
|
IntColumn |
IhmStartingModelCoord.getId() |
The serial number for this coordinate position.
|
IntColumn |
IhmStartingModelSeqDif.getId() |
A unique identifier for the entry.
|
IntColumn |
IhmStructAssembly.getId() |
A unique identifier for the structural assembly.
|
IntColumn |
IhmStructAssemblyClass.getId() |
A unique identifier for the structural assembly class.
|
IntColumn |
IhmStructAssemblyDetails.getId() |
A unique identifier for the structural assembly description.
|
IntColumn |
PdbxChemCompSubcomponentEntityList.getId() |
Ordinal index for the entities listed in this category.
|
IntColumn |
PdbxChemCompSubcomponentStructConn.getId() |
Ordinal index for the interactions listed in this category.
|
IntColumn |
PdbxDatabaseRemark.getId() |
A unique identifier for the PDB remark record.
|
IntColumn |
PdbxDccMap.getId() |
The ordered number of residue in the output list.
|
IntColumn |
PdbxDccRsccMapman.getId() |
The ordered number in the output list.
|
IntColumn |
PdbxDistantSolventAtoms.getId() |
The value of _pdbx_distant_solvent_atoms.id must uniquely identify
each item in the PDBX_DISTANT_SOLVENT_ATOMS list.
|
IntColumn |
PdbxInhibitorInfo.getId() |
Serial number.
|
IntColumn |
PdbxMissingAtomNonpoly.getId() |
The value of _pdbx_missing_atom_nonpoly.id must
uniquely identify each item in the PDBX_MISSING_ATOM_NONPOLY list.
|
IntColumn |
PdbxMissingAtomPoly.getId() |
The value of _pdbx_missing_atom_poly.id must
uniquely identify each item in the PDBX_MISSING_ATOM_POLY list.
|
IntColumn |
PdbxNmrAssignedChemShiftList.getId() |
An integer value that uniquely identifies a list of assigned chemical
shifts from other sets of assigned chemical shifts in the entry.
|
IntColumn |
PdbxNmrChemShiftReference.getId() |
An integer value that uniquely identifies a set of chemical shift
reference values from other sets of chemical shift referencing values.
|
IntColumn |
PdbxNmrConstraintFile.getId() |
Local unique identifier for the listed constraint file.
|
IntColumn |
PdbxNmrSpectralDim.getId() |
An integer value that specifies the dimension of a multidimensional NMR
spectrum.
|
IntColumn |
PdbxNmrSpectralPeakList.getId() |
Unique identifier for a spectral peak list in an entry.
|
IntColumn |
PdbxReferenceLinkedEntity.getId() |
The value of _pdbx_reference_linked_entity.id uniquely identifies
examples in the list of observed linking patterns.
|
IntColumn |
PdbxRmchOutlier.getId() |
The value of _pdbx_rmch_outlier.id must
uniquely identify each item in the PDBX_RMCH_OUTLIER list.
|
IntColumn |
PdbxRmsDevsCovByMonomer.getId() |
The value of _pdbx_rms_devs_cov_by_monomer.id must uniquely identify
each item in the PDBX_RMS_DEVS_COV_BY_MONOMER list.
|
IntColumn |
PdbxStereochemistry.getId() |
The value of _pdbx_stereochemistry.id must uniquely identify
each item in the PDBX_STEREOCHEMISTRY list.
|
IntColumn |
PdbxStructLegacyOperList.getId() |
This integer value must uniquely identify a
record in the PDBX_STRUCT_LEGACY_OPER_LIST list.
|
IntColumn |
PdbxStructModResidue.getId() |
The value of _pdbx_struct_mod_residue.id must uniquely identify
each item in the PDBX_STRUCT_MOD_RESIDUE list.
|
IntColumn |
PdbxStructSpecialSymmetry.getId() |
The value of _pdbx_struct_special_symmetry.id must uniquely identify
each item in the PDBX_STRUCT_SPECIAL_SYMMETRY list.
|
IntColumn |
PdbxSugarPhosphateGeometry.getId() |
The value of _pdbx_sugar_phosphate_geometry.id must uniquely identify
each item in the PDBX_SUGAR_PHOSPHATE_GEOMETRY list.
|
IntColumn |
PdbxUnobsOrZeroOccAtoms.getId() |
The value of _pdbx_unobs_or_zero_occ_atoms.id must uniquely identify
each item in the PDBX_UNOBS_OR_ZERO_OCC_ATOMS list.
|
IntColumn |
PdbxUnobsOrZeroOccResidues.getId() |
The value of _pdbx_unobs_or_zero_occ_residues.id must uniquely identify
each item in the PDBX_UNOBS_OR_ZERO_OCC_RESIDUES list.
|
IntColumn |
PdbxValAngle.getId() |
The value of _pdbx_val_angle.id must uniquely identify
each item in the PDBX_VAL_ANGLE list.
|
IntColumn |
PdbxValBond.getId() |
The value of _pdbx_val_bond.id must uniquely identify
each item in the PDBX_VAL_BOND list.
|
IntColumn |
PdbxValChiral.getId() |
The value of _pdbx_val_chiral.id must
uniquely identify each item in the PDBX_VAL_CHIRAL list.
|
IntColumn |
PdbxValContact.getId() |
The value of _pdbx_val_contact.id must uniquely identify
each item in the PDBX_VAL_CONTACT list.
|
IntColumn |
PdbxValidateChiral.getId() |
The value of _pdbx_validate_chiral.id must
uniquely identify each item in the PDBX_VALIDATE_CHIRAL list.
|
IntColumn |
PdbxValidateCloseContact.getId() |
The value of _pdbx_validate_close_contact.id must uniquely identify
each item in the PDBX_VALIDATE_CLOSE_CONTACT list.
|
IntColumn |
PdbxValidateMainChainPlane.getId() |
The value of _pdbx_validate_main_chain_plane.id must uniquely identify
each item in the PDBX_VALIDATE_MAIN_CHAIN_PLANE list.
|
IntColumn |
PdbxValidatePeptideOmega.getId() |
The value of _pdbx_validate_peptide_omega.id must
uniquely identify each item in the PDBX_VALIDATE_PEPTIDE_OMEGA list.
|
IntColumn |
PdbxValidatePlanes.getId() |
The value of _pdbx_validate_planes.id must uniquely identify
each item in the PDBX_VALIDATE_PLANES list.
|
IntColumn |
PdbxValidatePlanesAtom.getId() |
The value of _pdbx_validate_planes_atom.id must uniquely identify
each item in the PDBX_VALIDATE_PLANES_ATOM list.
|
IntColumn |
PdbxValidatePolymerLinkage.getId() |
The value of _pdbx_validate_polymer_linkage.id must uniquely identify
each item in the PDBX_VALIDATE_POLYMER_LINKAGE list.
|
IntColumn |
PdbxValidateRmsdAngle.getId() |
The value of _pdbx_validate_rmsd_angle.id must uniquely identify
each item in the PDBX_VALIDATE_RMSD_ANGLE list.
|
IntColumn |
PdbxValidateRmsdBond.getId() |
The value of _pdbx_validate_rmsd_bond.id must uniquely identify
each item in the PDBX_VALIDATE_RMSD_BOND list.
|
IntColumn |
PdbxValidateSymmContact.getId() |
The value of _pdbx_validate_symm_contact.id must uniquely identify
each item in the PDBX_VALIDATE_SYMM_CONTACT list.
|
IntColumn |
PdbxValidateTorsion.getId() |
The value of _pdbx_validate_torsion.id must
uniquely identify each item in the PDBX_VALIDATE_TORSION list.
|
IntColumn |
PdbxValSymContact.getId() |
The value of _pdbx_val_sym_contact.id must uniquely identify
each item in the PDBX_VAL_SYM_CONTACT list.
|
IntColumn |
AtomSite.getIhmModelId() |
The model id corresponding to the atom site.
|
IntColumn |
NdbStructNaBasePair.getILabelSeqId() |
Describes the sequence number of the i-th base in the base pair.
|
IntColumn |
NdbStructNaBasePairStep.getILabelSeqId1() |
Describes the sequence number of the i-th base in the first base pair
of the step.
|
IntColumn |
NdbStructNaBasePairStep.getILabelSeqId2() |
Describes the sequence number of the i-th base in the second base pair
of the step.
|
IntColumn |
CellMeasurementRefln.getIndexH() |
Miller index h of a reflection used for measurement of the unit
cell.
|
IntColumn |
DiffrnOrientRefln.getIndexH() |
Miller index h of a reflection used to define the orientation
matrix.
|
IntColumn |
DiffrnRefln.getIndexH() |
Miller index h of a reflection.
|
IntColumn |
DiffrnStandardRefln.getIndexH() |
Miller index h of a standard reflection used in the diffraction
measurement process.
|
IntColumn |
ExptlCrystalFace.getIndexH() |
Miller index h of the crystal face associated with the value
_exptl_crystal_face.perp_dist.
|
IntColumn |
PhasingMIRDerRefln.getIndexH() |
Miller index h for this reflection for this derivative.
|
IntColumn |
PhasingSetRefln.getIndexH() |
Miller index h of this reflection in this data set.
|
IntColumn |
Refln.getIndexH() |
Miller index h of the reflection.
|
IntColumn |
ReflnSysAbs.getIndexH() |
Miller index h of the reflection.
|
IntColumn |
CellMeasurementRefln.getIndexK() |
Miller index k of a reflection used for measurement of the unit
cell.
|
IntColumn |
DiffrnOrientRefln.getIndexK() |
Miller index k of a reflection used to define the orientation
matrix.
|
IntColumn |
DiffrnRefln.getIndexK() |
Miller index k of a reflection.
|
IntColumn |
DiffrnStandardRefln.getIndexK() |
Miller index k of a standard reflection used in the diffraction
measurement process.
|
IntColumn |
ExptlCrystalFace.getIndexK() |
Miller index k of the crystal face associated with the value
_exptl_crystal_face.perp_dist.
|
IntColumn |
PhasingMIRDerRefln.getIndexK() |
Miller index k for this reflection for this derivative.
|
IntColumn |
PhasingSetRefln.getIndexK() |
Miller index k of this reflection in this data set.
|
IntColumn |
Refln.getIndexK() |
Miller index k of the reflection.
|
IntColumn |
ReflnSysAbs.getIndexK() |
Miller index k of the reflection.
|
IntColumn |
CellMeasurementRefln.getIndexL() |
Miller index l of a reflection used for measurement of the unit
cell.
|
IntColumn |
DiffrnOrientRefln.getIndexL() |
Miller index l of a reflection used to define the orientation
matrix.
|
IntColumn |
DiffrnRefln.getIndexL() |
Miller index l of a reflection.
|
IntColumn |
DiffrnStandardRefln.getIndexL() |
Miller index l of a standard reflection used in the diffraction
measurement process.
|
IntColumn |
ExptlCrystalFace.getIndexL() |
Miller index l of the crystal face associated with the value
_exptl_crystal_face.perp_dist.
|
IntColumn |
PhasingMIRDerRefln.getIndexL() |
Miller index l for this reflection for this derivative.
|
IntColumn |
PhasingSetRefln.getIndexL() |
Miller index l of this reflection in this data set.
|
IntColumn |
Refln.getIndexL() |
Miller index l of the reflection.
|
IntColumn |
ReflnSysAbs.getIndexL() |
Miller index l of the reflection.
|
IntColumn |
EmFocusedIonBeam.getInitialThickness() |
Initial sample thickness
|
IntColumn |
PdbxLinkedEntityInstanceList.getInstanceId() |
The value of _pdbx_linked_entity_instance_list.instance_id is identifies a particular molecule
instance within an entry.
|
IntColumn |
PdbxMolecule.getInstanceId() |
The value of _pdbx_molecule.instance_id is identifies a particular molecule
in the molecule list.
|
IntColumn |
PdbxAuditRevisionHistory.getInternalVersion() |
An internal version number corresponding to millestone file
|
IntColumn |
DiffrnStandards.getIntervalCount() |
The number of reflection intensities between the measurement of
standard reflection intensities.
|
IntColumn |
Symmetry.getIntTablesNumber() |
Space-group number from International Tables for Crystallography
Vol.
|
IntColumn |
SpaceGroup.getITNumber() |
The number as assigned in International Tables for
Crystallography Vol.
|
IntColumn |
NdbStructNaBasePair.getJLabelSeqId() |
Describes the sequence number of the j-th base in the base pair.
|
IntColumn |
NdbStructNaBasePairStep.getJLabelSeqId1() |
Describes the sequence number of the j-th base in the first base pair
of the step.
|
IntColumn |
NdbStructNaBasePairStep.getJLabelSeqId2() |
Describes the sequence number of the j-th base in the second base pair
of the step.
|
IntColumn |
AtomSite.getLabelSeqId() |
This data item is a pointer to _entity_poly_seq.num in the
ENTITY_POLY_SEQ category.
|
IntColumn |
PdbxAtomSiteAnisoTls.getLabelSeqId() |
This data item is a pointer to _atom_site.label_seq_id in the
ATOM_SITE category.
|
IntColumn |
PdbxDistantSolventAtoms.getLabelSeqId() |
Part of the identifier for the distant solvent atom.
|
IntColumn |
PdbxFeatureMonomer.getLabelSeqId() |
A component of the identifier for the monomer.
|
IntColumn |
PdbxMissingAtomPoly.getLabelSeqId() |
Identifier of the residue.
|
IntColumn |
PdbxMissingResidueList.getLabelSeqId() |
An index in the sequence specified in category ENTITY_POLY_SEQ.
|
IntColumn |
PdbxNonstandardList.getLabelSeqId() |
Residue id of het group.
|
IntColumn |
PdbxRefineComponent.getLabelSeqId() |
A component of the identifier for the component.
|
IntColumn |
PdbxRemediationAtomSiteMapping.getLabelSeqId() |
A component of the atom_site identifier.
|
IntColumn |
PdbxRmchOutlier.getLabelSeqId() |
Identifier of the residue.
|
IntColumn |
PdbxRmsDevsCovByMonomer.getLabelSeqId() |
This data item is a pointer to _atom_site.label_seq_id in the
ATOM_SITE category.
|
IntColumn |
PdbxSolventAtomSiteMapping.getLabelSeqId() |
A component of the atom_site identifier.
|
IntColumn |
PdbxStereochemistry.getLabelSeqId() |
This data item is a pointer to _atom_site.label_seq_id in the
ATOM_SITE category.
|
IntColumn |
PdbxStructGroupComponents.getLabelSeqId() |
Part of the identifier for the component in this group assignment.
|
IntColumn |
PdbxStructModResidue.getLabelSeqId() |
Part of the identifier for the unobserved or zero occupancy residue.
|
IntColumn |
PdbxStructSpecialSymmetry.getLabelSeqId() |
Part of the identifier for the molecular component.
|
IntColumn |
PdbxSugarPhosphateGeometry.getLabelSeqId() |
This data item is a pointer to _atom_site.label_seq_id in the
ATOM_SITE category.
|
IntColumn |
PdbxUnobsOrZeroOccAtoms.getLabelSeqId() |
Part of the identifier for the unobserved or zero occupancy atom.
|
IntColumn |
PdbxUnobsOrZeroOccResidues.getLabelSeqId() |
Part of the identifier for the unobserved or zero occupancy residue.
|
IntColumn |
PdbxValChiral.getLabelSeqId() |
Identifier of the residue.
|
IntColumn |
StructMonNucl.getLabelSeqId() |
A component of the identifier for participants in the site.
|
IntColumn |
StructMonProt.getLabelSeqId() |
A component of the identifier for the monomer.
|
IntColumn |
StructMonProtCis.getLabelSeqId() |
A component of the identifier for the monomer.
|
IntColumn |
StructSiteGen.getLabelSeqId() |
A component of the identifier for participants in the site.
|
IntColumn |
PdbxValAngle.getLabelSeqId1() |
A component of the identifier for partner 1 of the angle
connection.
|
IntColumn |
PdbxValBond.getLabelSeqId1() |
A component of the identifier for partner 1 of the bond
connection.
|
IntColumn |
PdbxValContact.getLabelSeqId1() |
A component of the identifier for partner 1 of the close
contact.
|
IntColumn |
PdbxValSymContact.getLabelSeqId1() |
A component of the identifier for partner 1 of the close
contact.
|
IntColumn |
PdbxValAngle.getLabelSeqId2() |
A component of the identifier for partner 2 of the angle
connection.
|
IntColumn |
PdbxValBond.getLabelSeqId2() |
A component of the identifier for partner 2 of the bond
connection.
|
IntColumn |
PdbxValContact.getLabelSeqId2() |
A component of the identifier for partner 2 of the close
contact.
|
IntColumn |
PdbxValSymContact.getLabelSeqId2() |
A component of the identifier for partner 2 of the close
contact.
|
IntColumn |
PdbxValAngle.getLabelSeqId3() |
A component of the identifier for partner 3 of the angle
connection.
|
IntColumn |
PdbxSerialCrystallographyDataReduction.getLatticesIndexed() |
For experiments in which samples are provided in a
continuous stream, the total number of lattices indexed.
|
IntColumn |
EmMap.getLimitCol() |
The final column position of the map relative to the
Cartesian coordinate origin in voxel grid units.
|
IntColumn |
DiffrnReflns.getLimitHMax() |
The maximum value of the Miller index h for the
reflection data specified by _diffrn_refln.index_h.
|
IntColumn |
Reflns.getLimitHMax() |
Maximum value of the Miller index h for the reflection data.
|
IntColumn |
DiffrnReflns.getLimitHMin() |
The minimum value of the Miller index h for the
reflection data specified by _diffrn_refln.index_h.
|
IntColumn |
Reflns.getLimitHMin() |
Minimum value of the Miller index h for the reflection data.
|
IntColumn |
DiffrnReflns.getLimitKMax() |
The maximum value of the Miller index k for the
reflection data specified by _diffrn_refln.index_k.
|
IntColumn |
Reflns.getLimitKMax() |
Maximum value of the Miller index k for the reflection data.
|
IntColumn |
DiffrnReflns.getLimitKMin() |
The minimum value of the Miller index k for the
reflection data specified by _diffrn_refln.index_k.
|
IntColumn |
Reflns.getLimitKMin() |
Minimum value of the Miller index k for the reflection data.
|
IntColumn |
DiffrnReflns.getLimitLMax() |
The maximum value of the Miller index l for the
reflection data specified by _diffrn_refln.index_l.
|
IntColumn |
Reflns.getLimitLMax() |
Maximum value of the Miller index l for the reflection data.
|
IntColumn |
DiffrnReflns.getLimitLMin() |
The minimum value of the Miller index l for the
reflection data specified by _diffrn_refln.index_l.
|
IntColumn |
Reflns.getLimitLMin() |
Minimum value of the Miller index l for the reflection data.
|
IntColumn |
EmMap.getLimitRow() |
The final row position of the map relative to the
Cartesian coordinate origin in voxel grid units.
|
IntColumn |
EmMap.getLimitSec() |
The final section position of the map relative to the
Cartesian coordinate origin in voxel grid units.
|
IntColumn |
PdbxReferenceLinkedEntityCompLink.getLinkedEntityId() |
The value of _pdbx_reference_linked_entity_comp_link.linked_entity_id is a reference
_pdbx_reference_linked_entity_comp_list.linked_entity_id in the pdbx_reference_linked_entity_comp_list
category.
|
IntColumn |
PdbxReferenceLinkedEntityCompList.getLinkedEntityId() |
This data item is a pointer to _pdbx_reference_linked_entity.id
in the pdbx_reference_linked_entity category.
|
IntColumn |
PdbxReferenceLinkedEntityLink.getLinkedEntityId() |
The value of _pdbx_reference_linked_entity_link.linked_entity_id is a reference
_pdbx_reference_linked_entity_comp_list.linked_entity_id in the pdbx_reference_linked_entity_comp_list
category.
|
IntColumn |
IhmCrossLinkList.getLinkerChemCompDescriptorId() |
Pointer to the chemical description of the linker.
|
IntColumn |
PdbxEntityBranchLink.getLinkId() |
The value of _pdbx_entity_branch_link.link_id uniquely identifies
linkages within the branched entity.
|
IntColumn |
PdbxEntityPolyCompLinkList.getLinkId() |
The value of _pdbx_entity_poly_comp_link_list.link_id uniquely identifies
linkages within the branched entity.
|
IntColumn |
PdbxLinkedEntityLinkList.getLinkId() |
The value of _pdbx_linked_entity_link_list.link_id uniquely identifies
linkages between entities with a molecule.
|
IntColumn |
PdbxReferenceEntityLink.getLinkId() |
The value of _pdbx_reference_entity_link.link_id uniquely identifies
linkages between entities with a molecule.
|
IntColumn |
PdbxReferenceEntityPolyLink.getLinkId() |
The value of _pdbx_reference_entity_poly_link.link_id uniquely identifies
a linkage within a polymer entity.
|
IntColumn |
PdbxReferenceLinkedEntityCompLink.getLinkId() |
The value of _pdbx_reference_linked_entity_comp_link.link_id uniquely identifies
linkages within the linked entity.
|
IntColumn |
PdbxReferenceLinkedEntityLink.getLinkId() |
The value of _pdbx_reference_linked_entity_link.link_id uniquely identifies
linkages within the linked entity.
|
IntColumn |
PdbxReferenceLinkedEntityCompList.getListId() |
This data item uniquely identifies a constituent of with the linked entity.
|
IntColumn |
PdbxReferenceLinkedEntityCompLink.getListId1() |
The value of _pdbx_reference_linked_entity_comp_link.list_id_1 is a reference
_pdbx_reference_linked_entity_comp_list.list_id in the pdbx_reference_linked_entity_comp_list
category.
|
IntColumn |
PdbxReferenceLinkedEntityCompLink.getListId2() |
The value of _pdbx_reference_linked_entity_comp_link.list_id_2 is a reference
_pdbx_reference_linked_entity_comp_list.list_id in the pdbx_reference_linked_entity_comp_list
category.
|
IntColumn |
Refine.getLsNumberConstraints() |
The number of constrained (non-refined or dependent) parameters
in the least-squares process.
|
IntColumn |
Refine.getLsNumberParameters() |
The number of parameters refined in the least-squares process.
|
IntColumn |
Refine.getLsNumberReflnsAll() |
The number of reflections that satisfy the resolution limits
established by _refine.ls_d_res_high and _refine.ls_d_res_low.
|
IntColumn |
PdbxDccDensityCorr.getLsNumberReflnsObs() |
The number of unique reflections (work+test sets).
|
IntColumn |
Refine.getLsNumberReflnsObs() |
The number of reflections that satisfy the resolution limits
established by _refine.ls_d_res_high and _refine.ls_d_res_low
and the observation limit established by
_reflns.observed_criterion.
|
IntColumn |
PdbxDccDensityCorr.getLsNumberReflnsRFree() |
The number of reflections for the test set only.
|
IntColumn |
Refine.getLsNumberReflnsRFree() |
The number of reflections that satisfy the resolution limits
established by _refine.ls_d_res_high and _refine.ls_d_res_low
and the observation limit established by
_reflns.observed_criterion, and that were used as the test
reflections (i.e.
|
IntColumn |
Refine.getLsNumberReflnsRWork() |
The number of reflections that satisfy the resolution limits
established by _refine.ls_d_res_high and _refine.ls_d_res_low
and the observation limit established by
_reflns.observed_criterion, and that were used as the working
reflections (i.e.
|
IntColumn |
Refine.getLsNumberRestraints() |
The number of restrained parameters.
|
IntColumn |
PdbxNmrSpectralDim.getMagnetizationLinkageId() |
The magnetization linkage ID is used to designate dimensions of a multidimensional
NMR experiment where the nuclei observed in the dimensions are directly
linked by a one bond scalar coupling.
|
IntColumn |
PdbxAuditRevisionHistory.getMajorRevision() |
The major version number of deposition release.
|
IntColumn |
PdbxVersion.getMajorVersion() |
Major version number for this datablock.
|
IntColumn |
PdbxDccDensity.getMFo_DFc_3sigmaNegative() |
The number of electron density negative peaks less than 3 sigma.
|
IntColumn |
PdbxDccDensity.getMFo_DFc_3sigmaPositive() |
The number of electron density positive peaks larger than 3 sigma.
|
IntColumn |
PdbxDccDensity.getMFo_DFc_6sigmaNegative() |
The number of electron density negative peaks less than 6 sigma.
|
IntColumn |
PdbxDccDensity.getMFo_DFc_6sigmaPositive() |
The number of electron density positive peaks larger than 6 sigma.
|
IntColumn |
PdbxAuditRevisionHistory.getMinorRevision() |
The minor version number of deposition release.
|
IntColumn |
IhmEnsembleInfo.getModelGroupId() |
An identifier for the cluster or group of models being deposited.
|
IntColumn |
IhmEnsembleSubSample.getModelGroupId() |
The model group identifier corresponding to the sub sample, if applicable.
|
IntColumn |
IhmModelRepresentative.getModelGroupId() |
The model group identifier corresponding to the representative model.
|
IntColumn |
IhmMultiStateModelGroupLink.getModelGroupId() |
An identifier for the structural model group.
|
IntColumn |
IhmOrderedEnsemble.getModelGroupIdBegin() |
The model group id corresponding to the node at the origin of directed edge.
|
IntColumn |
IhmOrderedEnsemble.getModelGroupIdEnd() |
The model group id corresponding to the node at the end of the directed edge.
|
IntColumn |
Ihm2demClassAverageFitting.getModelId() |
The model number corresponding to the 2DEM fitting result presented.
|
IntColumn |
Ihm3demRestraint.getModelId() |
The model number corresponding to the 3DEM fitting result presented.
|
IntColumn |
IhmCrossLinkPseudoSite.getModelId() |
The identifier to the model that the pseudo site corresponds to.
|
IntColumn |
IhmCrossLinkResultParameters.getModelId() |
The model number corresponding to the cross link result presented.
|
IntColumn |
IhmEprRestraint.getModelId() |
The model number corresponding to the EPR fitting result presented.
|
IntColumn |
IhmGaussianObjSite.getModelId() |
The model id corresponding to the gaussian object.
|
IntColumn |
IhmModelGroupLink.getModelId() |
An identifier for the structural model.
|
IntColumn |
IhmModelList.getModelId() |
A unique identifier for the structural model being deposited.
|
IntColumn |
IhmModelRepresentative.getModelId() |
The model identifier corresponding to the representative model.
|
IntColumn |
IhmResiduesNotModeled.getModelId() |
An identifier for the structural model.
|
IntColumn |
IhmSasRestraint.getModelId() |
The model number corresponding to the SAS fitting result presented.
|
IntColumn |
IhmSphereObjSite.getModelId() |
The model id corresponding to the sphere object.
|
IntColumn |
PdbxMissingAtomNonpoly.getModelId() |
The model number for the given residue
|
IntColumn |
PdbxMissingAtomPoly.getModelId() |
The model number for the given residue
|
IntColumn |
PdbxRmchOutlier.getModelId() |
The model number for the given residue
|
IntColumn |
PdbxRmsDevsCovByMonomer.getModelId() |
The model number
|
IntColumn |
PdbxStereochemistry.getModelId() |
The model number for the given angle
|
IntColumn |
PdbxSugarPhosphateGeometry.getModelId() |
The model number
|
IntColumn |
PdbxValAngle.getModelId() |
The model number for the given angle
|
IntColumn |
PdbxValBond.getModelId() |
The model number for the given bond
|
IntColumn |
PdbxValChiral.getModelId() |
The model number for the given residue
|
IntColumn |
PdbxValContact.getModelId() |
The model number for the given angle
|
IntColumn |
PdbxValSymContact.getModelId() |
The model number for the given angle
|
IntColumn |
PdbxVirtualAngle.getModelId() |
The model number for the given angle
|
IntColumn |
PdbxVirtualBond.getModelId() |
The model number for the given bond
|
IntColumn |
PdbxVirtualTorsion.getModelId() |
The model number for the given angle
|
IntColumn |
NdbStructNaBasePair.getModelNumber() |
Describes the model number of the the base pair.
|
IntColumn |
NdbStructNaBasePairStep.getModelNumber() |
Describes the model number of the the base pair step.
|
IntColumn |
IhmModelRepresentationDetails.getModelObjectCount() |
The number of primitive objects used to model a feature in the case of 'by-feature' granularity.
|
IntColumn |
IhmPolyProbePosition.getModResChemCompDescriptorId() |
An identifier to the chemical descriptor of the modified residue, if applicable.
|
IntColumn |
PdbxDccDensity.getMtrixNumber() |
Number of matrix for the NCS groups used in refinement.
|
IntColumn |
PdbxNmrConstraints.getNAAlpha_angleConstraintsTotalCount() |
The total number of nucleic acid alpha-angle constraints used in
the final structure calculation.
|
IntColumn |
PdbxNmrConstraints.getNABeta_angleConstraintsTotalCount() |
The total number of nucleic acid beta-angle constraints used in
the final structure calculation.
|
IntColumn |
PdbxNmrConstraints.getNAChi_angleConstraintsTotalCount() |
The total number of nucleic acid chi-angle constraints used
in the final structure calculation.
|
IntColumn |
PdbxNmrConstraints.getNADelta_angleConstraintsTotalCount() |
The total number of nucleic acid delta-angle constraints used in
the final structure calculation.
|
IntColumn |
PdbxNmrConstraints.getNAEpsilon_angleConstraintsTotalCount() |
The total number of nucleic acid epsilon-angle constraints used
in the final structure calculation.
|
IntColumn |
PdbxNmrConstraints.getNAGamma_angleConstraintsTotalCount() |
The total number of nucleic acid gamma-angle constraints used in
the final structure calculation.
|
IntColumn |
PdbxNmrConstraints.getNAOther_angleConstraintsTotalCount() |
The total number of nucleic acid other-angle constraints used
in the final structure calculation.
|
IntColumn |
PdbxNmrConstraints.getNASugarPuckerConstraintsTotalCount() |
The total number of nucleic acid sugar pucker constraints used
in the final structure calculation.
|
IntColumn |
ChemicalConnAtom.getNCA() |
The number of connected atoms excluding terminal hydrogen atoms.
|
IntColumn |
EmEntityAssemblyNaturalsource.getNcbiTaxId() |
The NCBI taxonomy id for the natural organism source of the component.
|
IntColumn |
EmEntityAssemblyRecombinant.getNcbiTaxId() |
The NCBI taxonomy id of the expression host used to produce the component.
|
IntColumn |
EmVirusNaturalHost.getNcbiTaxId() |
The NCBI taxonomy of the host species from which the virus was isolated.
|
IntColumn |
PdbxDccDensity.getNcsGroupNumber() |
Number of NCS groups used in refinement.
|
IntColumn |
PdbxPolySeqScheme.getNdbSeqNum() |
NDB residue number.
|
IntColumn |
PdbxSugarPhosphateGeometry.getNextLabelSeqId() |
The next_label_seq_id covalent element of this monomer.
|
IntColumn |
PdbxEntitySrcGenChrom.getNextStepId() |
This item unique identifier for the next production step.
|
IntColumn |
PdbxEntitySrcGenClone.getNextStepId() |
This item unique identifier for the next production step.
|
IntColumn |
PdbxEntitySrcGenExpress.getNextStepId() |
This item unique identifier for the next production step.
|
IntColumn |
PdbxEntitySrcGenFract.getNextStepId() |
This item unique identifier for the next production step.
|
IntColumn |
PdbxEntitySrcGenLysis.getNextStepId() |
This item unique identifier for the next production step.
|
IntColumn |
PdbxEntitySrcGenProdDigest.getNextStepId() |
This item unique identifier for the next production step.
|
IntColumn |
PdbxEntitySrcGenProdOther.getNextStepId() |
This item unique identifier for the next production step.
|
IntColumn |
PdbxEntitySrcGenProdPcr.getNextStepId() |
This item unique identifier for the next production step.
|
IntColumn |
PdbxEntitySrcGenProteolysis.getNextStepId() |
This item unique identifier for the next production step.
|
IntColumn |
PdbxEntitySrcGenRefold.getNextStepId() |
This item unique identifier for the next production step.
|
IntColumn |
ChemicalConnAtom.getNH() |
The total number of hydrogen atoms attached to this atom,
regardless of whether they are included in the refinement or
the ATOM_SITE list.
|
IntColumn |
PdbxNmrConstraints.getNOEConstraintsTotal() |
The total number of all NOE constraints used in the final
structure calculation.
|
IntColumn |
PdbxNmrConstraints.getNOEInterentityTotalCount() |
The total number of interentity, NOE constraints
used in the final structure calculation.
|
IntColumn |
PdbxNmrConstraints.getNOEIntraresidueTotalCount() |
The total number of all intraresidue, [i-j]=0, NOE constraints
used in the final structure calculation.
|
IntColumn |
PdbxNmrConstraints.getNOELongRangeTotalCount() |
The total number of long range [i-j]>5 NOE constraints used
in the final structure calculation.
|
IntColumn |
PdbxNmrConstraints.getNOEMediumRangeTotalCount() |
The total number of medium range 1<[i-j]<=5 NOE constraints used
in the final structure calculation.
|
IntColumn |
PdbxNmrConstraints.getNOESequentialTotalCount() |
The total number of sequential, [i-j]=1, NOE constraints used
in the final structure calculation.
|
IntColumn |
EmImaging.getNominalMagnification() |
The magnification indicated by the microscope readout.
|
IntColumn |
PdbxHelicalSymmetry.getNSubunitsDivisor() |
Number of subunits used in the calculation of rise and
rotation.
|
IntColumn |
PdbxHelicalSymmetryDepositorInfo.getNSubunitsDivisor() |
Number of subunits used in the calculation of rise and
rotation.
|
IntColumn |
DatabasePDBRev.getNum() |
The value of _database_PDB_rev.num must uniquely and
sequentially identify a record in the DATABASE_PDB_REV list.
|
IntColumn |
EntityPolySeq.getNum() |
The value of _entity_poly_seq.num must uniquely and sequentially
identify a record in the ENTITY_POLY_SEQ list.
|
IntColumn |
PdbxBranchScheme.getNum() |
This data item is a pointer to _pdbx_entity_branch_list.num in the
PDBX_ENTITY_BRANCH_LIST category.
|
IntColumn |
PdbxEntityBranchList.getNum() |
The value pair _pdbx_entity_branch_list.num and _pdbx_entity_branch_list.comp_id
must uniquely identify a record in the PDBX_ENTITY_BRANCH_LIST list.
|
IntColumn |
PdbxReferenceEntityPolySeq.getNum() |
The value of _pdbx_reference_entity_poly_seq.num must uniquely and sequentially
identify a record in the PDBX_REFERENCE_ENTITY_POLY_SEQ list.
|
IntColumn |
PdbxRmsDevsCovalent.getNumAngles() |
Total number of angles in calculation of _pdbx_rms_devs_covalent.rms_angles.
|
IntColumn |
PdbxRmsDevsCovByMonomer.getNumAngles() |
Total number of angles in calculation of _pdbx_rms_devs_cov_by_monomer.rms_angles.
|
IntColumn |
PdbxRmsDevsCovalent.getNumAnglesBase() |
Total number of base angles in calculation of _pdbx_rms_devs_covalent.rms_angles_base.
|
IntColumn |
PdbxRmsDevsCovalent.getNumAnglesPhosphate() |
Total number of sugar angles in calculation of _pdbx_rms_devs_covalent.rms_angles_phosphate.
|
IntColumn |
PdbxRmsDevsCovalent.getNumAnglesSugar() |
Total number of sugar angles in calculation of _pdbx_rms_devs_covalent.rms_angles_sugar.
|
IntColumn |
ChemicalConnAtom.getNumber() |
The chemical sequence number to be associated with this atom.
|
IntColumn |
DiffrnReflns.getNumber() |
The total number of measured intensities, excluding reflections
that are classified as systematically absent.
|
IntColumn |
DiffrnReflnsClass.getNumber() |
The total number of measured intensities for each reflection
class, excluding the systematic absences arising from
centring translations.
|
IntColumn |
DiffrnStandards.getNumber() |
The number of unique standard reflections used during the
measurement of the diffraction intensities.
|
IntColumn |
PdbxRefineLsRestrNcs.getNumber() |
The the number of this type of restraint applied to the domain
specified by _pdbx_refine_ls_restr_ncs.dom_id and in the domains
against which it was restrained.
|
IntColumn |
RefineLsRestr.getNumber() |
The number of parameters of this type subjected to restraint in
least-squares refinement.
|
IntColumn |
PdbxDataProcessingReflns.getNumberAll() |
Total number of reflections used in data processing.
|
IntColumn |
Reflns.getNumberAll() |
The total number of reflections in the REFLN list (not the
DIFFRN_REFLN list).
|
IntColumn |
ChemComp.getNumberAtomsAll() |
The total number of atoms in the component.
|
IntColumn |
ChemCompChir.getNumberAtomsAll() |
The total number of atoms bonded to the atom specified by
_chem_comp_chir.atom_id.
|
IntColumn |
ChemCompPlane.getNumberAtomsAll() |
The total number of atoms in the plane.
|
IntColumn |
ChemLinkChir.getNumberAtomsAll() |
The total number of atoms bonded to the atom specified by
_chem_link_chir.atom_id.
|
IntColumn |
ChemLinkPlane.getNumberAtomsAll() |
The total number of atoms in the plane.
|
IntColumn |
ChemComp.getNumberAtomsNh() |
The number of non-hydrogen atoms in the component.
|
IntColumn |
ChemCompChir.getNumberAtomsNh() |
The number of non-hydrogen atoms bonded to the atom specified by
_chem_comp_chir.atom_id.
|
IntColumn |
ChemCompPlane.getNumberAtomsNh() |
The number of non-hydrogen atoms in the plane.
|
IntColumn |
ChemLinkChir.getNumberAtomsNh() |
The number of non-hydrogen atoms bonded to the atom specified by
_chem_link_chir.atom_id.
|
IntColumn |
ChemLinkPlane.getNumberAtomsNh() |
The number of non-hydrogen atoms in the plane.
|
IntColumn |
PdbxNonstandardList.getNumberAtomsNh() |
The number of non-hydrogen atoms in the het group.
|
IntColumn |
RefineHist.getNumberAtomsSolvent() |
The number of solvent atoms that were included in the model at
this cycle of the refinement.
|
IntColumn |
RefineHist.getNumberAtomsTotal() |
The total number of atoms that were included in the model at
this cycle of the refinement.
|
IntColumn |
PhasingMADExpt.getNumberClust() |
The number of clusters of data sets in this phasing experiment.
|
IntColumn |
EmImageScans.getNumberDigitalImages() |
The number of real images.
|
IntColumn |
Reflns.getNumberGt() |
The number of reflections in the REFLN list (not the
DIFFRN_REFLN list) that are significantly intense, satisfying
the criterion specified by _reflns.threshold_expression.
|
IntColumn |
ReflnsClass.getNumberGt() |
For each reflection class, the number of significantly intense
reflections (see _reflns.threshold_expression) in the REFLN
list (not the DIFFRN_REFLN list).
|
IntColumn |
AtomType.getNumberInCell() |
Total number of atoms of this atom type in the unit cell.
|
IntColumn |
PdbxDataProcessingReflns.getNumberMarkedReject() |
Total number of reflections marked for rejection in data processing.
|
IntColumn |
ReflnsShell.getNumberMeasuredAll() |
The total number of reflections measured for this
shell.
|
IntColumn |
ReflnsShell.getNumberMeasuredGt() |
The number of significantly intense reflections
(see _reflns.threshold_expression) measured for this
shell.
|
IntColumn |
ReflnsShell.getNumberMeasuredObs() |
The number of reflections classified as 'observed'
(see _reflns.observed_criterion) for this
shell.
|
IntColumn |
PdbxDiffrnReflnsShell.getNumberObs() |
The number of observed reflections in the resolution shell.
|
IntColumn |
Reflns.getNumberObs() |
The number of reflections in the REFLN list (not the DIFFRN_REFLN
list) classified as observed (see _reflns.observed_criterion).
|
IntColumn |
EmEntityAssembly.getNumberOfCopies() |
number of copies
|
IntColumn |
Ihm3demRestraint.getNumberOfGaussians() |
In case of Gaussian mixture models, the number of gaussians
is a parameter used to covert the 3DEM maps and models into
GMMs.
|
IntColumn |
EntityPoly.getNumberOfMonomers() |
The number of monomers in the polymer.
|
IntColumn |
PdbxHelicalSymmetry.getNumberOfOperations() |
Number of operations.
|
IntColumn |
PdbxHelicalSymmetryDepositorInfo.getNumberOfOperations() |
Number of operations.
|
IntColumn |
Ihm2demClassAverageRestraint.getNumberOfProjections() |
Number of 2D projections of the model used in the fitting.
|
IntColumn |
PdbxPhasingMADSet.getNumberOfSites() |
_pdbx_phasing_MAD_set.number_of_sites records the number of site
refined for the phasing set.
|
IntColumn |
PhasingMIRDer.getNumberOfSites() |
The number of heavy-atom sites in this derivative.
|
IntColumn |
PdbxNmrSpectralPeakList.getNumberOfSpectralDimensions() |
Number of dimension in the spectrum from which the peak list was extracted.
|
IntColumn |
ReflnsShell.getNumberPossible() |
The number of unique reflections it is possible to measure in
this shell.
|
IntColumn |
Ihm2demClassAverageRestraint.getNumberRawMicrographs() |
The number of raw micrographs used to obtain the class average.
|
IntColumn |
RefineHist.getNumberReflnsAll() |
The number of reflections that satisfy the resolution limits
established by _refine_hist.d_res_high and
_refine_hist.d_res_low.
|
IntColumn |
RefineLsShell.getNumberReflnsAll() |
The number of reflections that satisfy the resolution limits
established by _refine_ls_shell.d_res_high and
_refine_ls_shell.d_res_low.
|
IntColumn |
RefineHist.getNumberReflnsObs() |
The number of reflections that satisfy the resolution limits
established by _refine_hist.d_res_high and
_refine_hist.d_res_low and the observation criterion
established by _reflns.observed_criterion.
|
IntColumn |
RefineLsShell.getNumberReflnsObs() |
The number of reflections that satisfy the resolution limits
established by _refine_ls_shell.d_res_high and
_refine_ls_shell.d_res_low and the observation criterion
established by _reflns.observed_criterion.
|
IntColumn |
RefineHist.getNumberReflnsRFree() |
The number of reflections that satisfy the resolution limits
established by _refine_hist.d_res_high and
_refine_hist.d_res_low and the observation limit
established by _reflns.observed_criterion, and that were used
as the test reflections (i.e.
|
IntColumn |
RefineLsShell.getNumberReflnsRFree() |
The number of reflections that satisfy the resolution limits
established by _refine_ls_shell.d_res_high and
_refine_ls_shell.d_res_low and the observation limit
established by _reflns.observed_criterion, and that were used
as the test reflections (i.e.
|
IntColumn |
RefineHist.getNumberReflnsRWork() |
The number of reflections that satisfy the resolution limits
established by _refine_hist.d_res_high and
_refine_hist.d_res_low and the observation limit
established by _reflns.observed_criterion, and that were used
as the working reflections (i.e.
|
IntColumn |
RefineLsShell.getNumberReflnsRWork() |
The number of reflections that satisfy the resolution limits
established by _refine_ls_shell.d_res_high and
_refine_ls_shell.d_res_low and the observation limit
established by _reflns.observed_criterion, and that were used
as the working reflections (i.e.
|
IntColumn |
PhasingMADClust.getNumberSet() |
The number of data sets in this cluster of data sets.
|
IntColumn |
StructSheet.getNumberStrands() |
The number of strands in the sheet.
|
IntColumn |
RefineFunctMinimized.getNumberTerms() |
The number of observations in this term.
|
IntColumn |
ReflnsClass.getNumberTotal() |
For each reflection class, the total number of reflections
in the REFLN list (not the DIFFRN_REFLN list).
|
IntColumn |
ReflnsShell.getNumberUniqueAll() |
The total number of measured reflections which are symmetry-
unique after merging for this shell.
|
IntColumn |
ReflnsShell.getNumberUniqueGt() |
The total number of significantly intense reflections
(see _reflns.threshold_expression) resulting from merging
measured symmetry-equivalent reflections for this resolution
shell.
|
IntColumn |
ReflnsShell.getNumberUniqueObs() |
The total number of measured reflections classified as 'observed'
(see _reflns.observed_criterion) which are symmetry-unique
after merging for this shell.
|
IntColumn |
PdbxRmsDevsCovalent.getNumBonds() |
Total number of bonds in calculation of _pdbx_rms_devs_covalent.rms_bonds.
|
IntColumn |
PdbxRmsDevsCovByMonomer.getNumBonds() |
Total number of bonds in calculation of _pdbx_rms_devs_cov_by_monomer.rms_bonds.
|
IntColumn |
PdbxRmsDevsCovalent.getNumBondsBase() |
Total number of base bonds in calculation of _pdbx_rms_devs_covalent.rms_bonds_base.
|
IntColumn |
PdbxRmsDevsCovalent.getNumBondsPhosphate() |
Total number of sugar bonds in calculation of _pdbx_rms_devs_covalent.rms_bonds_phosphate.
|
IntColumn |
PdbxRmsDevsCovalent.getNumBondsSugar() |
Total number of sugar bonds in calculation of _pdbx_rms_devs_covalent.rms_bonds_sugar.
|
IntColumn |
PdbxIonInfo.getNumbPerAsymUnit() |
Number of ion molecules per asymmetric unit.
|
IntColumn |
PdbxSolventInfo.getNumbPerAsymUnit() |
Number of solvent molecules per asymmetric unit.
|
IntColumn |
Em3dReconstruction.getNumClassAverages() |
This item was correspondence to two type of em dataset
processing_emDataSet_singleParticle.numClassAverages
processing_emDataSet_icosahedral.numClassAverages
|
IntColumn |
EmFinalClassification.getNumClasses() |
The number of classes used in the final 2D classification
|
IntColumn |
EmAssembly.getNumComponents() |
The number of components of the biological assembly.
|
IntColumn |
PdbxDatabasePDBMaster.getNumConect() |
The number of PDB records of a particular type.
|
IntColumn |
PdbxSolnScatterModel.getNumConformersCalculated() |
The number of model conformers calculated.
|
IntColumn |
PdbxSolnScatterModel.getNumConformersSubmitted() |
The number of model conformers submitted in the entry
|
IntColumn |
PdbxDatabasePDBMaster.getNumCoord() |
The number of PDB records of a particular type.
|
IntColumn |
PdbxEntityAssembly.getNumCopies() |
The number of copies of this entity in the assembly.
|
IntColumn |
EmImageRecording.getNumDiffractionImages() |
The number of diffraction images collected.
|
IntColumn |
IhmEnsembleInfo.getNumEnsembleModels() |
The number of models in the current ensemble being described.
|
IntColumn |
IhmEnsembleInfo.getNumEnsembleModelsDeposited() |
The number of models from the current ensemble that is deposited.
|
IntColumn |
PdbxDatabasePDBMaster.getNumFtnote() |
The number of PDB records of a particular type.
|
IntColumn |
EmImageRecording.getNumGridsImaged() |
Number of grids in the microscopy session
|
IntColumn |
PdbxDatabasePDBMaster.getNumHelix() |
The number of PDB records of a particular type.
|
IntColumn |
PdbxDatabasePDBMaster.getNumHet() |
The number of PDB records of a particular type.
|
IntColumn |
EmDiffractionStats.getNumIntensitiesMeasured() |
Total number of diffraction intensities measured (before averaging)
|
IntColumn |
IhmCrossLinkResult.getNumModels() |
Number of models sampled in the integrative modeling task, for which
the crosslinking distance is provided.
|
IntColumn |
IhmEnsembleSubSample.getNumModels() |
The number of models in the ensemble sub sample.
|
IntColumn |
IhmModelingPostProcess.getNumModelsBegin() |
The number of models at the beginning of the post processing step.
|
IntColumn |
IhmModelingProtocolDetails.getNumModelsBegin() |
The number of models in the beginning of the step.
|
IntColumn |
IhmEnsembleSubSample.getNumModelsDeposited() |
The number of models in the sub sample that are deposited.
|
IntColumn |
IhmModelingPostProcess.getNumModelsEnd() |
The number of models the the end of the post processing step.
|
IntColumn |
IhmModelingProtocolDetails.getNumModelsEnd() |
The number of models at the end of the step.
|
IntColumn |
PdbxNaStrandInfo.getNumOfNAStrandsPerAsymUnit() |
Number of na strands per asymmetric unit.
|
IntColumn |
PdbxNaStrandInfo.getNumOfNAStrandsPerBiolUnit() |
Number of na strands per biological unit.
|
IntColumn |
PdbxDrugInfo.getNumOfWholeMolecule() |
Number of drug molecules per biological unit.
|
IntColumn |
Em2dProjectionSelection.getNumParticles() |
The number of particles selected from the projection set of images.
|
IntColumn |
Em3dReconstruction.getNumParticles() |
The number of 2D projections or 3D subtomograms used in the 3d reconstruction
|
IntColumn |
EmParticleSelection.getNumParticlesSelected() |
The number of particles selected from the projection set of images.
|
IntColumn |
PdbxDrugInfo.getNumPerAsymUnit() |
Number of drug molecules per asymmetric unit.
|
IntColumn |
PdbxInhibitorInfo.getNumPerAsymUnit() |
Number of inhibitor molecules per asymmetric unit.
|
IntColumn |
PdbxProteinInfo.getNumPerAsymUnit() |
Number of protein molecules per asymmetric unit.
|
IntColumn |
PdbxTrnaInfo.getNumPerAsymUnit() |
Number of trna molecules per asymmetric unit.
|
IntColumn |
EmImageRecording.getNumRealImages() |
The number of micrograph images collected.
|
IntColumn |
PdbxDatabasePDBMaster.getNumRemark() |
The number of PDB records of a particular type.
|
IntColumn |
PdbxDatabasePDBMaster.getNumSeqres() |
The number of PDB records of a particular type.
|
IntColumn |
PdbxDatabasePDBMaster.getNumSheet() |
The number of PDB records of a particular type.
|
IntColumn |
PdbxDatabasePDBMaster.getNumSite() |
The number of PDB records of a particular type.
|
IntColumn |
IhmModelingProtocol.getNumSteps() |
Number of independent steps in the modeling protocol.
|
IntColumn |
EmDiffractionShell.getNumStructureFactors() |
Number of measured structure factors in this resolution shell
|
IntColumn |
EmDiffractionStats.getNumStructureFactors() |
Number of structure factors obtained (merged amplitudes + phases)
|
IntColumn |
PdbxDatabasePDBMaster.getNumTer() |
The number of PDB records of a particular type.
|
IntColumn |
PdbxSolnScatter.getNumTimeFrames() |
The number of time frame solution scattering images used.
|
IntColumn |
EmVolumeSelection.getNumTomograms() |
The number of tomograms used in the extraction/selection
|
IntColumn |
PdbxDatabasePDBMaster.getNumTrans() |
The number of PDB records of a particular type.
|
IntColumn |
PdbxDatabasePDBMaster.getNumTurn() |
The number of PDB records of a particular type.
|
IntColumn |
EmVolumeSelection.getNumVolumesExtracted() |
The number of volumes selected from the projection set of images.
|
IntColumn |
IhmGeometricObjectAxis.getObjectId() |
Identifier to the geometric object.
|
IntColumn |
IhmGeometricObjectDistanceRestraint.getObjectId() |
Identifier to the geometric object involved in the distance restraint.
|
IntColumn |
IhmGeometricObjectHalfTorus.getObjectId() |
Identifier to the geometric object.
|
IntColumn |
IhmGeometricObjectList.getObjectId() |
A unique identifier for the geometric object.
|
IntColumn |
IhmGeometricObjectPlane.getObjectId() |
Identifier to the geometric object.
|
IntColumn |
IhmGeometricObjectSphere.getObjectId() |
Identifier to the geometric object.
|
IntColumn |
IhmGeometricObjectTorus.getObjectId() |
Identifier to the geometric object.
|
IntColumn |
PdbxDepuiValidationStatusFlags.getOccupancyOutliersHigh() |
Count of atoms with occupancy values greater than 1
|
IntColumn |
PdbxDepuiValidationStatusFlags.getOccupancyOutliersLow() |
Count of atoms with occupancy values less than 0
|
IntColumn |
PdbxEntitySrcGenExpressTimepoint.getOD() |
The optical density of the expression culture in arbitrary units at the
timepoint specified.
|
IntColumn |
StructSheetOrder.getOffset() |
Designates the relative position in the sheet, plus or minus, of
the second residue range to the first.
|
IntColumn |
StructSheetTopology.getOffset() |
Designates the relative position in the sheet, plus or minus, of
the second residue range to the first.
|
IntColumn |
PdbxStructAssembly.getOligomericCount() |
The number of polymer molecules in the assembly.
|
IntColumn |
CitationAuthor.getOrdinal() |
This data item defines the order of the author's name in the
list of authors of a citation.
|
IntColumn |
CitationEditor.getOrdinal() |
This data item defines the order of the editor's name in the
list of editors of a citation.
|
IntColumn |
EmAuthorList.getOrdinal() |
ID 1 corresponds to the main author of the entry
|
IntColumn |
PdbxAuditAuthor.getOrdinal() |
A unique sequential integer identifier for each author.
|
IntColumn |
PdbxAuditRevisionCategory.getOrdinal() |
A unique identifier for the pdbx_audit_revision_category record.
|
IntColumn |
PdbxAuditRevisionDetails.getOrdinal() |
A unique identifier for the pdbx_audit_revision_details record.
|
IntColumn |
PdbxAuditRevisionGroup.getOrdinal() |
A unique identifier for the pdbx_audit_revision_group record.
|
IntColumn |
PdbxAuditRevisionHistory.getOrdinal() |
A unique identifier for the pdbx_audit_revision_history record.
|
IntColumn |
PdbxAuditRevisionItem.getOrdinal() |
A unique identifier for the pdbx_audit_revision_item record.
|
IntColumn |
PdbxAuditSupport.getOrdinal() |
A unique sequential integer identifier for each source of support for this entry.
|
IntColumn |
PdbxChemCompAtomEdit.getOrdinal() |
This data item uniquely identifies and orders each atom edit instruction.
|
IntColumn |
PdbxChemCompAtomRelated.getOrdinal() |
An ordinal index for this category
|
IntColumn |
PdbxChemCompBondEdit.getOrdinal() |
This data item uniquely identifies and orders each bond edit instruction.
|
IntColumn |
PdbxChemCompDepositorInfo.getOrdinal() |
Ordinal index for this category.
|
IntColumn |
PdbxChemCompDescriptor.getOrdinal() |
Ordinal index for this category.
|
IntColumn |
PdbxChemCompIdentifier.getOrdinal() |
Ordinal index for this category.
|
IntColumn |
PdbxChemCompInstanceDepositorInfo.getOrdinal() |
The value of pdbx_chem_comp_instance_depositor_info.ordinal must uniquely identify a record in
the PDBX_CHEM_COMP_INSTANCE_DEPOSITOR_INFO list.
|
IntColumn |
PdbxChemCompSynonyms.getOrdinal() |
An ordinal index for this category
|
IntColumn |
PdbxChemCompUploadDepositorInfo.getOrdinal() |
Ordinal index for this category.
|
IntColumn |
PdbxDccDensityCorr.getOrdinal() |
The ordered number in the output list.
|
IntColumn |
PdbxDepositionMessageFileReference.getOrdinal() |
Ordinal index for the each file reference.
|
IntColumn |
PdbxDepositionMessageInfo.getOrdinal() |
Ordinal index for the each message.
|
IntColumn |
PdbxDepuiUpload.getOrdinal() |
Ordinal identifier for each update record.
|
IntColumn |
PdbxEntityBranchDescriptor.getOrdinal() |
Ordinal index for this category.
|
IntColumn |
PdbxEntityInstanceFeature.getOrdinal() |
An ordinal index for this category
|
IntColumn |
PdbxNmrSoftware.getOrdinal() |
An ordinal index for this category
|
IntColumn |
PdbxNmrSystematicChemShiftOffset.getOrdinal() |
An ordinal identifier uniquely identifying records in the pdbx_nmr_systematic_chem_shift_offset category.
|
IntColumn |
PdbxReferenceEntitySrcNat.getOrdinal() |
The value of _pdbx_reference_entity_src_nat.ordinal distinguishes
source details for this entity.
|
IntColumn |
PdbxReferenceMoleculeAnnotation.getOrdinal() |
This data item distinguishes anotations for this entity.
|
IntColumn |
PdbxReferenceMoleculeDetails.getOrdinal() |
The value of _pdbx_reference_molecule_details.ordinal is an ordinal that
distinguishes each descriptive text for this entity.
|
IntColumn |
PdbxReferenceMoleculeFeatures.getOrdinal() |
The value of _pdbx_reference_molecule_features.ordinal distinguishes
each feature for this entity.
|
IntColumn |
PdbxReferenceMoleculeRelatedStructures.getOrdinal() |
The value of _pdbx_reference_molecule_related_structures.ordinal distinguishes
related structural data for each entity.
|
IntColumn |
PdbxReferenceMoleculeSynonyms.getOrdinal() |
The value of _pdbx_reference_molecule_synonyms.ordinal is an ordinal
to distinguish synonyms for this entity.
|
IntColumn |
PdbxRelatedExpDataSet.getOrdinal() |
Ordinal identifier for each related experimental data set.
|
IntColumn |
PdbxStructChemCompDiagnostics.getOrdinal() |
An ordinal index for this category
|
IntColumn |
PdbxStructChemCompFeature.getOrdinal() |
An ordinal index for this category
|
IntColumn |
PdbxStructGroupComponentRange.getOrdinal() |
The value of _pdbx_struct_group_component_range.id must uniquely identify
a record in the PDBX_STRUCT_GROUP_COMPONENT_RANGE list.
|
IntColumn |
PdbxStructGroupComponents.getOrdinal() |
The value of _pdbx_struct_group_components.ordinal must uniquely identify
each item in the PDBX_STRUCT_GROUP_COMPONENTS list.
|
IntColumn |
PdbxStructRefSeqDifDepositorInfo.getOrdinal() |
Ordinal index for this category.
|
IntColumn |
PdbxSupportingExpDataSet.getOrdinal() |
Ordinal identifier for each experimental data set.
|
IntColumn |
IhmEprRestraint.getOrdinalId() |
A unique identifier for the EPR restraint description.
|
IntColumn |
IhmInterfaceResidueFeature.getOrdinalId() |
A unique identifier for the category.
|
IntColumn |
IhmNonPolyFeature.getOrdinalId() |
A unique identifier for the category.
|
IntColumn |
IhmPolyAtomFeature.getOrdinalId() |
A unique identifier for the category.
|
IntColumn |
IhmPolyResidueFeature.getOrdinalId() |
A unique identifier for the category.
|
IntColumn |
IhmStartingModelCoord.getOrdinalId() |
A unique identifier for this coordinate position.
|
IntColumn |
PdbxChemCompModelAtom.getOrdinalId() |
The value of _pdbx_chem_comp_model_atom.ordinal_id is an
ordinal identifer for each atom in the PDBX_CHEM_COMP_MODEL_ATOM list.
|
IntColumn |
PdbxChemCompModelBond.getOrdinalId() |
The value of _pdbx_chem_comp_model_bond.ordinal_id is an
ordinal identifer for each atom in the PDBX_CHEM_COMP_MODEL_BOND list.
|
IntColumn |
PdbxDepositGroupIndex.getOrdinalId() |
A unique identifier for the index entry within the deposition group.
|
IntColumn |
EmMap.getOriginCol() |
The position of the first column of the map relative to the
Cartesian coordinate origin in voxel grid units.
|
IntColumn |
EmMap.getOriginRow() |
The position of the first row of the map relative to the
Cartesian coordinate origin in voxel grid units.
|
IntColumn |
EmMap.getOriginSec() |
The position of the first section of the map relative to the
Cartesian coordinate origin in voxel grid units.
|
IntColumn |
EmStartModel.getOrthogonalTiltNumImages() |
number of images used to generate the orthogonal tilt startup model
|
IntColumn |
AtomType.getOxidationNumber() |
Formal oxidation state of this atom type in the structure.
|
IntColumn |
PdbxStructPackGen.getPackingType() |
Packing type
|
IntColumn |
PdbxAtlas.getPageId() |
A unique identifier for a NDB ATLAS index page.
|
IntColumn |
NdbStructNaBasePair.getPairNumber() |
Sequential number of pair in the pair sequence.
|
IntColumn |
IhmStructAssemblyDetails.getParentAssemblyId() |
The parent of this assembly in a hierarchy.
|
IntColumn |
EmEntityAssembly.getParentId() |
The parent of this assembly.
|
IntColumn |
EmMap.getPartition() |
Identifies the archive file partition number of a primary map,
half map, additional map, or mask.
|
IntColumn |
PdbxSequencePattern.getPatternCount() |
Number of occurences of the sequence pattern within the
named strand.
|
IntColumn |
PdbxMissingResidueList.getPdbModelId() |
PDB model ID.
|
IntColumn |
PdbxDistantSolventAtoms.getPDBModelNum() |
Part of the identifier for the distant solvent atom.
|
IntColumn |
PdbxStructGroupComponentRange.getPDBModelNum() |
Part of the identifier for the component range in this group assignment.
|
IntColumn |
PdbxStructGroupComponents.getPDBModelNum() |
Part of the identifier for the component in this group assignment.
|
IntColumn |
PdbxStructModResidue.getPDBModelNum() |
Part of the identifier for the modified polymer component.
|
IntColumn |
PdbxStructSpecialSymmetry.getPDBModelNum() |
Part of the identifier for the molecular component.
|
IntColumn |
PdbxUnobsOrZeroOccAtoms.getPDBModelNum() |
Part of the identifier for the unobserved or zero occupancy atom.
|
IntColumn |
PdbxUnobsOrZeroOccResidues.getPDBModelNum() |
Part of the identifier for the unobserved or zero occupancy residue.
|
IntColumn |
PdbxValidateChiral.getPDBModelNum() |
The model number for the given residue
This data item is a pointer to _atom_site.pdbx_PDB_model_num in the
ATOM_SITE category.
|
IntColumn |
PdbxValidateCloseContact.getPDBModelNum() |
The model number for the given contact
|
IntColumn |
PdbxValidateMainChainPlane.getPDBModelNum() |
The model number for the residue in which the plane is calculated
This data item is a pointer to _atom_site.pdbx_PDB_model_num in the
ATOM_SITE category.
|
IntColumn |
PdbxValidatePeptideOmega.getPDBModelNum() |
The model number for the given residue
This data item is a pointer to _atom_site.pdbx_PDB_model_num in the
ATOM_SITE category.
|
IntColumn |
PdbxValidatePlanes.getPDBModelNum() |
The model number for the given angle
This data item is a pointer to _atom_site.pdbx_PDB_model_num in the
ATOM_SITE category.
|
IntColumn |
PdbxValidatePlanesAtom.getPDBModelNum() |
The model number for an atom site defining the plane
This data item is a pointer to _atom_site.pdbx_PDB_model_num in the
ATOM_SITE category.
|
IntColumn |
PdbxValidatePolymerLinkage.getPDBModelNum() |
The model number for the given linkage
|
IntColumn |
PdbxValidateRmsdAngle.getPDBModelNum() |
The model number for the given angle
|
IntColumn |
PdbxValidateRmsdBond.getPDBModelNum() |
The model number for the given bond
|
IntColumn |
PdbxValidateSymmContact.getPDBModelNum() |
The model number for the given angle
|
IntColumn |
PdbxValidateTorsion.getPDBModelNum() |
The model number for the given residue
This data item is a pointer to _atom_site.pdbx_PDB_model_num in the
ATOM_SITE category.
|
IntColumn |
ChemCompAtom.getPdbxAlign() |
Atom name alignment offset in PDB atom field.
|
IntColumn |
PdbxRemediationAtomSiteMapping.getPdbxAlign() |
An optional alignment flag.
|
IntColumn |
EntitySrcGen.getPdbxBegSeqNum() |
The beginning polymer sequence position for the polymer section corresponding
to this source.
|
IntColumn |
EntitySrcNat.getPdbxBegSeqNum() |
The beginning polymer sequence position for the polymer section corresponding
to this source.
|
IntColumn |
PdbxEntitySrcSyn.getPdbxBegSeqNum() |
The beginning polymer sequence position for the polymer section corresponding
to this source.
|
IntColumn |
ChemCompAtom.getPdbxComponentEntityId() |
A reference to entity identifier in data category
pdbx_chem_comp_subcomponent_entity_list.
|
IntColumn |
ChemCompAtom.getPdbxComponentId() |
A reference to _pdbx_reference_entity_list.component_id
|
IntColumn |
StructNcsDomLim.getPdbxComponentId() |
Record number of the NCS domain limit assignment.
|
IntColumn |
ChemComp.getPdbxComponentNo() |
A serial number used by PDB in the FORMUL record.
|
IntColumn |
Citation.getPdbxDatabaseIdPubMed() |
Ascession number used by PubMed to categorize a specific
bibliographic entry.
|
IntColumn |
EntitySrcGen.getPdbxEndSeqNum() |
The ending polymer sequence position for the polymer section corresponding
to this source.
|
IntColumn |
EntitySrcNat.getPdbxEndSeqNum() |
The ending polymer sequence position for the polymer section corresponding
to this source.
|
IntColumn |
PdbxEntitySrcSyn.getPdbxEndSeqNum() |
The ending polymer sequence position for the polymer section corresponding
to this source.
|
IntColumn |
Refln.getPdbxFiberLayer() |
The fiber layer line for this reflection.
|
IntColumn |
AtomSite.getPdbxFormalCharge() |
The net integer charge assigned to this atom.
|
IntColumn |
ChemComp.getPdbxFormalCharge() |
The net integer charge assigned to this component.
|
IntColumn |
DiffrnDetector.getPdbxFramesTotal() |
The total number of data frames collected for this
data set.
|
IntColumn |
AtomSiteAnisotrop.getPdbxLabelSeqId() |
Pointer to _atom_site.label_seq_id
|
IntColumn |
StructMonProtCis.getPdbxLabelSeqId2() |
Pointer to _atom_site.label_seq_id
|
IntColumn |
StructAsym.getPdbxMissingNumBeginOfChainInSeqres() |
This data item provides the information of how many residues
which do appear in the SEQRES record are missing at the
beginning of the strand.
|
IntColumn |
StructAsym.getPdbxMissingNumBeginOfChainNotInSeqres() |
This data item provides the information of how many residues
which do not appear in the SEQRES record are missing at the
beginning of the strand.
|
IntColumn |
StructAsym.getPdbxMissingNumEndOfChainNotInSeqres() |
This data item provides the information of how many residues
which do not appear in the SEQRES record are missing at the
end of the strand.
|
IntColumn |
AtomType.getPdbxNElectrons() |
Number of electrons in atom used in scattering factor
|
IntColumn |
RefineLsRestrNcs.getPdbxNumber() |
Records the number restraints in the contributing to the RMS statistic.
|
IntColumn |
Reflns.getPdbxNumberAnomalous() |
This item is the same as _reflns.number_obs, but applies to
observed Friedel pairs only.
|
IntColumn |
ReflnsShell.getPdbxNumberAnomalous() |
This item is a duplicate of _reflns_shell.number_unique_all,
but only for the observed Friedel pairs.
|
IntColumn |
RefineHist.getPdbxNumberAtomsCarb() |
Number of carbohydrate atoms included in refinement
|
IntColumn |
RefineHist.getPdbxNumberAtomsLigand() |
Number of ligand atoms included in refinement
|
IntColumn |
RefineHist.getPdbxNumberAtomsLipid() |
Number of lipid atoms included in refinement
|
IntColumn |
RefineHist.getPdbxNumberAtomsNucleicAcid() |
Number of nucleic atoms included in refinement
|
IntColumn |
RefineHist.getPdbxNumberAtomsProtein() |
Number of protein atoms included in refinement
|
IntColumn |
RefineHist.getPdbxNumberAtomsSolvent() |
Number of solvent atoms used in refinement
|
IntColumn |
RefineHist.getPdbxNumberAtomsTotal() |
Number of atoms used in refinement
|
IntColumn |
PhasingMAD.getPdbxNumberDataSets() |
_phasing_MAD.pdbx_loc records the number
of data sets used for MAD phasing.
|
IntColumn |
PhasingMIR.getPdbxNumberDerivatives() |
The number of derivatives used in this phasing experiment.
|
IntColumn |
Reflns.getPdbxNumberMeasuredAll() |
Total number of measured reflections.
|
IntColumn |
DiffrnReflns.getPdbxNumberObs() |
The number of reflections satisfying the observation criterion
as in _diffrn_reflns.pdbx_observed_criterion
|
IntColumn |
Entity.getPdbxNumberOfMolecules() |
A place holder for the number of molecules of the entity in
the entry.
|
IntColumn |
RefineHist.getPdbxNumberResiduesTotal() |
Total number of polymer residues included in refinement.
|
IntColumn |
ChemComp.getPdbxNumberSubcomponents() |
The number of subcomponents represented in this component.
|
IntColumn |
StructSiteGen.getPdbxNumRes() |
Number of residues in the site.
|
IntColumn |
StructSite.getPdbxNumResidues() |
Number of residues in the site.
|
IntColumn |
StructAsym.getPdbxOrder() |
This data item gives the order of the structural elements in the
ATOM_SITE category.
|
IntColumn |
AuditAuthor.getPdbxOrdinal() |
This data item defines the order of the author's name in the
list of audit authors.
|
IntColumn |
ChemCompAtom.getPdbxOrdinal() |
Ordinal index for the component atom list.
|
IntColumn |
ChemCompBond.getPdbxOrdinal() |
Ordinal index for the component bond list.
|
IntColumn |
RefineLsRestrNcs.getPdbxOrdinal() |
An ordinal index for the list of NCS restraints.
|
IntColumn |
Reflns.getPdbxOrdinal() |
An ordinal identifier for this set of reflection statistics.
|
IntColumn |
ReflnsShell.getPdbxOrdinal() |
An ordinal identifier for this resolution shell.
|
IntColumn |
Software.getPdbxOrdinal() |
An ordinal index for this category
|
IntColumn |
StructRefSeqDif.getPdbxOrdinal() |
A synthetic integer primary key for this category.
|
IntColumn |
StructConf.getPdbxPDBHelixLength() |
A placeholder for the lengths of the helix of the PDB
HELIX record.
|
IntColumn |
AtomSite.getPdbxPDBModelNum() |
PDB model number.
|
IntColumn |
AtomSiteAnisotrop.getPdbxPDBModelNum() |
Pointer to _atom_site.pdbx_PDB_model_num
|
IntColumn |
GeomAngle.getPdbxPDBModelNum() |
Pointer to _atom_site.pdbx_PDB_model_num
|
IntColumn |
GeomBond.getPdbxPDBModelNum() |
Pointer to _atom_site.pdbx_PDB_model_num
|
IntColumn |
GeomContact.getPdbxPDBModelNum() |
Pointer to _atom_site.pdbx_PDB_model_num
|
IntColumn |
GeomTorsion.getPdbxPDBModelNum() |
Pointer to _atom_site.pdbx_PDB_model_num
|
IntColumn |
StructMonProtCis.getPdbxPDBModelNum() |
Pointer to _atom_site.pdbx_PDB_model_num
|
IntColumn |
StructBiolGen.getPdbxPDBOrder() |
An ordering index used to reproduce the presentation of
chain order in the original PDB format data files.
|
IntColumn |
Refine.getPdbxPdLsMatrixBandWidth() |
The least squares refinement "band matrix" approximation to the full matrix.
|
IntColumn |
Refine.getPdbxPdMeasNumberOfPoints() |
The total number of points in the measured
diffractogram.
|
IntColumn |
Refine.getPdbxPdNumberOfPoints() |
The total number of data points in the processed diffractogram.
|
IntColumn |
Refine.getPdbxPdNumberOfPowderPatterns() |
The total number of powder patterns used.
|
IntColumn |
StructConn.getPdbxPtnr3LabelSeqId() |
A component of the identifier for partner 1 of the
structure connection.
|
IntColumn |
PhasingMAD.getPdbxReflns() |
_phasing_MAD.pdbx_reflns records the number of
reflections used for MAD phasing.
|
IntColumn |
PhasingMIRDer.getPdbxReflns() |
record number of reflections used for each derivative.
|
IntColumn |
PhasingMAD.getPdbxReflnsAcentric() |
_phasing_MAD.pdbx_reflns_acentric records the number of
acentric reflections for MAD phasing.
|
IntColumn |
PhasingMIRDerShell.getPdbxReflnsAcentric() |
record number of acentric reflections used for phasing for each
derivative, but broken into resolution shells
|
IntColumn |
PhasingMAD.getPdbxReflnsCentric() |
_phasing_MAD.pdbx_reflns_centric records the number of
centric reflections for MAD phasing.
|
IntColumn |
DiffrnReflns.getPdbxRejects() |
The number of rejected reflections in the data set.
|
IntColumn |
ReflnsShell.getPdbxRejects() |
The number of rejected reflections in the resolution
shell.
|
IntColumn |
ChemCompAtom.getPdbxResidueNumbering() |
Preferred residue numbering in the BIRD definition.
|
IntColumn |
Refln.getPdbxRFreeFlag() |
The R-free flag originally assigned to the reflection.
|
IntColumn |
Reflns.getPdbxScalingRejects() |
Number of reflections rejected in scaling operations.
|
IntColumn |
AtomType.getPdbxScatZ() |
Atomic number of atom in scattering amplitude.
|
IntColumn |
EntityPoly.getPdbxSeqAlignBegin() |
The sequence position in the database sequence at which the
alignment with your sequence begins.
|
IntColumn |
EntityPoly.getPdbxSeqAlignEnd() |
The sequence position in the database sequence at which the
alignment with your sequence ends.
|
IntColumn |
EntitySrcGen.getPdbxSrcId() |
This data item is an ordinal identifier for entity_src_gen data records.
|
IntColumn |
EntitySrcNat.getPdbxSrcId() |
This data item is an ordinal identifier for entity_src_nat data records.
|
IntColumn |
PdbxEntitySrcSyn.getPdbxSrcId() |
This data item is an ordinal identifier for pdbx_entity_src_syn data records.
|
IntColumn |
RefineLsShell.getPdbxTotalNumberOfBinsUsed() |
Total number of bins used.
|
IntColumn |
ChemComp.getPdbxTypeModified() |
Modification flag.
|
IntColumn |
PdbxValidatePlanesAtom.getPlaneId() |
A pointer to _pdbx_validate_planes.id
This is an integer serial number.
|
IntColumn |
IhmPolyProbeConjugate.getPositionId() |
An identifier for the position in the polymeric entity where the probe
is attached.
|
IntColumn |
IhmEnsembleInfo.getPostProcessId() |
An identifier for the post modeling analyses carried out.
|
IntColumn |
PdbxRemediationAtomSiteMapping.getPrePdbxAlign() |
An optional alignment flag.
|
IntColumn |
IhmProbeList.getProbeChemCompDescriptorId() |
The identifier for the chemical descriptor of the probe.
|
IntColumn |
IhmLigandProbe.getProbeId() |
An identifier for the probe.
|
IntColumn |
IhmPolyProbeConjugate.getProbeId() |
An identifier for the probe.
|
IntColumn |
IhmProbeList.getProbeId() |
A unique identifier for the category.
|
IntColumn |
IhmOrderedEnsemble.getProcessId() |
An identifier for the ordered process.
|
IntColumn |
EmEulerAngleAssignment.getProjMatchingNumProjections() |
Number of reference projections used for euler angle assignment
|
IntColumn |
PdbxStructRefSeqFeatureProp.getPropertyId() |
This uniquely identifies the a property of a sequence feature in
the STRUCT_REF_SEQ_FEATURE_PROPx category.
|
IntColumn |
PdbxNmrConstraints.getProteinChiAngleConstraintsTotalCount() |
The total number of chi angle constraints used in the final structure
calculation.
|
IntColumn |
PdbxEntitySrcGenPure.getProteinOligomericState() |
The oligomeric state of the protein.
|
IntColumn |
PdbxNmrConstraints.getProteinOtherAngleConstraintsTotalCount() |
The total number of other angle constraints used in the final structure
calculation.
|
IntColumn |
PdbxNmrConstraints.getProteinPhiAngleConstraintsTotalCount() |
The total number of phi angle constraints used in the final structure
calculation
|
IntColumn |
PdbxNmrConstraints.getProteinPsiAngleConstraintsTotalCount() |
The total number of psi angle constraints used in the final structure
calculation.
|
IntColumn |
IhmModelingPostProcess.getProtocolId() |
An identifier for the modeling protocol, whose post modeling analysis
is being carried out.
|
IntColumn |
IhmModelingProtocolDetails.getProtocolId() |
An index for the modeling protocol carried out.
|
IntColumn |
IhmModelList.getProtocolId() |
An identifier to the modeling protocol that produced the model.
|
IntColumn |
IhmCrossLinkPseudoSite.getPseudoSiteId() |
The pseudo site identifier corresponding to the cross link partner.
|
IntColumn |
IhmPseudoSiteFeature.getPseudoSiteId() |
The pseudo site identifier corresponding to this feature.
|
IntColumn |
StructConn.getPtnr1AuthSeqId() |
A component of the identifier for partner 1 of the structure
connection.
|
IntColumn |
PdbxStructConnAngle.getPtnr1LabelSeqId() |
A component of the identifier for partner 1 of the structure angle.
|
IntColumn |
PdbxStructLink.getPtnr1LabelSeqId() |
A component of the identifier for partner 1 of the structure
connection.
|
IntColumn |
StructConn.getPtnr1LabelSeqId() |
A component of the identifier for partner 1 of the structure
connection.
|
IntColumn |
StructConn.getPtnr2AuthSeqId() |
A component of the identifier for partner 2 of the structure
connection.
|
IntColumn |
PdbxStructConnAngle.getPtnr2LabelSeqId() |
A component of the identifier for partner 2 of the structure angle.
|
IntColumn |
PdbxStructLink.getPtnr2LabelSeqId() |
A component of the identifier for partner 2 of the structure
connection.
|
IntColumn |
StructConn.getPtnr2LabelSeqId() |
A component of the identifier for partner 2 of the structure
connection.
|
IntColumn |
PdbxStructConnAngle.getPtnr3LabelSeqId() |
A component of the identifier for partner 1 of the structure angle.
|
IntColumn |
EmImageScans.getQuantBitSize() |
The number of bits per pixel.
|
IntColumn |
PdbxDccGeometry.getRamachandranAllowedNumber() |
Number of allowed residues in Ramachandran plot.
|
IntColumn |
PdbxDccGeometry.getRamachandranFavoredNumber() |
Number of favored residues in Ramachandran plot.
|
IntColumn |
PdbxDccGeometry.getRamachandranOutlierNumber() |
Number of outliers in Ramachandran plot.
|
IntColumn |
EmStartModel.getRandomConicalTiltNumImages() |
number of images used to generate the random conical tilt startup model
|
IntColumn |
StructSheetHbond.getRange1BegLabelSeqId() |
A component of the identifier for the residue for the first
partner of the first hydrogen bond between two residue ranges
in a sheet.
|
IntColumn |
StructSheetHbond.getRange1EndLabelSeqId() |
A component of the identifier for the residue for the first
partner of the last hydrogen bond between two residue ranges in
a sheet.
|
IntColumn |
PdbxStructSheetHbond.getRange1LabelSeqId() |
A component of the residue identifier for the first partner of the
registration hydrogen bond between two residue ranges in a sheet.
|
IntColumn |
StructSheetHbond.getRange2BegLabelSeqId() |
A component of the identifier for the residue for the second
partner of the first hydrogen bond between two residue ranges
in a sheet.
|
IntColumn |
StructSheetHbond.getRange2EndLabelSeqId() |
A component of the identifier for the residue for the second
partner of the last hydrogen bond between two residue ranges in
a sheet.
|
IntColumn |
PdbxStructSheetHbond.getRange2LabelSeqId() |
A component of the residue identifier for the second partner of the
registration hydrogen bond between two residue ranges in a sheet.
|
IntColumn |
IhmProbeList.getReactiveProbeChemCompDescriptorId() |
The identifier for the chemical descriptor of the reactive probe.
|
IntColumn |
IhmExternalFiles.getReferenceId() |
A pointer to the source of the external file - either DOI or locally stored.
|
IntColumn |
IhmExternalReferenceInfo.getReferenceId() |
A unique identifier for the external reference.
|
IntColumn |
PdbxPhasingDm.getReflns() |
The value of _pdbx_phasing_dm.reflns identifies the number
of centric and acentric reflections.
|
IntColumn |
PdbxPhasingDmShell.getReflns() |
The value of _pdbx_phasing_dm_shell.reflns identifies the number
of centric and acentric reflections with resolution shells.
|
IntColumn |
PdbxPhasingMADSet.getReflns() |
_pdbx_phasing_MAD_set.reflns records the number of
reflections used for MAD phasing.
|
IntColumn |
PdbxPhasingMADSetShell.getReflns() |
_pdbx_phasing_MAD_set_shell.reflns records the number of
reflections used for MAD phasing.
|
IntColumn |
PdbxPhasingMADShell.getReflns() |
_pdbx_phasing_MAD_shell.reflns records the number of
reflections used for MAD phasing.
|
IntColumn |
PhasingMIR.getReflns() |
The total number of reflections phased in the native data set.
|
IntColumn |
PhasingMIRDerShell.getReflns() |
The number of reflections in this shell.
|
IntColumn |
PhasingMIRShell.getReflns() |
The number of reflections in this shell.
|
IntColumn |
PdbxPhasingDm.getReflnsAcentric() |
The value of _pdbx_phasing_dm.reflns_acentric identifies the number
of acentric reflections.
|
IntColumn |
PdbxPhasingDmShell.getReflnsAcentric() |
The value of _pdbx_phasing_dm_shell.reflns_acentric identifies the number
of acentric reflections with resolution shells.
|
IntColumn |
PdbxPhasingMADSet.getReflnsAcentric() |
_pdbx_phasing_MAD_set.reflns_acentric records the number of
acentric reflections for MAD phasing.
|
IntColumn |
PdbxPhasingMADSetShell.getReflnsAcentric() |
_pdbx_phasing_MAD_set_shell.reflns_acentric records the number of
acentric reflections for MAD phasing.
|
IntColumn |
PhasingMIR.getReflnsAcentric() |
The number of acentric reflections phased in the native data
set.
|
IntColumn |
PhasingMIRDer.getReflnsAcentric() |
The number of acentric reflections used in phasing for this
derivative.
|
IntColumn |
PhasingMIRShell.getReflnsAcentric() |
The number of acentric reflections in this shell.
|
IntColumn |
PhasingMIRDer.getReflnsAnomalous() |
The number of anomalous reflections used in phasing for this
derivative.
|
IntColumn |
PhasingMIRShell.getReflnsAnomalous() |
The number of anomalous reflections in this shell.
|
IntColumn |
PdbxPhasingDm.getReflnsCentric() |
The value of _pdbx_phasing_dm.reflns_centric identifies the number
of centric reflections.
|
IntColumn |
PdbxPhasingDmShell.getReflnsCentric() |
The value of _pdbx_phasing_dm_shell.reflns_centric identifies the number
of centric reflections with resolution shells.
|
IntColumn |
PdbxPhasingMADSet.getReflnsCentric() |
_pdbx_phasing_MAD_set.reflns_centric records the number of
centric reflections for MAD phasing.
|
IntColumn |
PdbxPhasingMADSetShell.getReflnsCentric() |
_pdbx_phasing_MAD_set_shell.reflns_centric records the number of
centric reflections for MAD phasing.
|
IntColumn |
PdbxPhasingMADShell.getReflnsCentric() |
_pdbx_phasing_MAD_shell.reflns_centric records the number of
centric reflections for MAD phasing.
|
IntColumn |
PhasingMIR.getReflnsCentric() |
The number of centric reflections phased in the native data
set.
|
IntColumn |
PhasingMIRDer.getReflnsCentric() |
The number of centric reflections used in phasing for this
derivative.
|
IntColumn |
PhasingMIRShell.getReflnsCentric() |
The number of centric reflections in this shell.
|
IntColumn |
CellMeasurement.getReflnsUsed() |
The total number of reflections used to determine the unit cell.
|
IntColumn |
PdbxDiffrnReflnsShell.getRejects() |
The number of rejected reflections in the resolution shell
|
IntColumn |
RefineLsRestr.getRejects() |
The number of parameters of this type that deviate from ideal
values by more than the amount defined in
_refine_ls_restr.criterion in the model obtained by restrained
least-squares refinement.
|
IntColumn |
IhmModelList.getRepresentationId() |
An identifier to the multi-scale model representation id of the model.
|
IntColumn |
IhmModelRepresentationDetails.getRepresentationId() |
An identifier that collects or groups together a set of representations.
|
IntColumn |
PdbxNmrEnsemble.getRepresentativeConformer() |
The number of the conformer identified as most representative.
|
IntColumn |
PdbxSolnScatterModel.getRepresentativeConformer() |
The index of the representative conformer among the submitted conformers for the entry
|
IntColumn |
PdbxNmrEnsembleRms.getResidueRangeBegin() |
Structure statistics are often calculated only over the well-ordered region(s)
of the biopolymer.
|
IntColumn |
PdbxNmrEnsembleRms.getResidueRangeEnd() |
The ending residue number: e.g.
|
IntColumn |
Ihm2demClassAverageFitting.getRestraintId() |
Identifier to the 2dem class average restraint.
|
IntColumn |
IhmCrossLinkPseudoSite.getRestraintId() |
An identifier for the crosslink restraint between a pair of residues.
|
IntColumn |
IhmCrossLinkResult.getRestraintId() |
An identifier for the crosslink restraint between a pair of residues.
|
IntColumn |
IhmCrossLinkResultParameters.getRestraintId() |
An identifier for the crosslink restraint between a pair of residues.
|
IntColumn |
PdbxAuditRevisionCategory.getRevisionOrdinal() |
A pointer to _pdbx_audit_revision_history.ordinal
|
IntColumn |
PdbxAuditRevisionDetails.getRevisionOrdinal() |
A pointer to _pdbx_audit_revision_history.ordinal
|
IntColumn |
PdbxAuditRevisionGroup.getRevisionOrdinal() |
A pointer to _pdbx_audit_revision_history.ordinal
|
IntColumn |
PdbxAuditRevisionItem.getRevisionOrdinal() |
A pointer to _pdbx_audit_revision_history.ordinal
|
IntColumn |
DatabasePDBRevRecord.getRevNum() |
This data item is a pointer to _database_PDB_rev.num in the
DATABASE_PDB_REV category.
|
IntColumn |
PdbxDccGeometry.getRotamerOutliersNumber() |
Number of rotamer outliers.
|
IntColumn |
IhmModelingPostProcess.getScriptFileId() |
The file id corresponding to the script used in the post processing step.
|
IntColumn |
IhmModelingProtocolDetails.getScriptFileId() |
The file id corresponding to the script used in the modeling protocol step.
|
IntColumn |
IhmStartingComputationalModels.getScriptFileId() |
The file id corresponding to the script used in the computational modeling.
|
IntColumn |
StructRefSeq.getSeqAlignBeg() |
The sequence position in the entity or biological unit described
in the data block at which the alignment begins.
|
IntColumn |
StructRefSeq.getSeqAlignEnd() |
The sequence position in the entity or biological unit described
in the data block at which the alignment ends.
|
IntColumn |
IhmHydroxylRadicalFpRestraint.getSeqId() |
The sequence index for the residue.
|
IntColumn |
IhmPolyAtomFeature.getSeqId() |
The sequence index of the residue to which the atom belongs.
|
IntColumn |
IhmPolyProbePosition.getSeqId() |
The sequence index of the residue in the entity where the probe is attached.
|
IntColumn |
IhmStartingModelCoord.getSeqId() |
The sequence index corresponding this to coordinate position.
|
IntColumn |
IhmStartingModelSeqDif.getSeqId() |
The residue index.
|
IntColumn |
PdbxPolySeqScheme.getSeqId() |
Pointer to _entity_poly_seq.num
|
IntColumn |
PdbxStructRefSeqInsertion.getSeqId() |
Part of the author identifier of the inserted residue.
|
IntColumn |
IhmCrossLinkList.getSeqId1() |
The sequence index for the first monomer partner in the cross link.
|
IntColumn |
IhmCrossLinkRestraint.getSeqId1() |
The sequence index for the first monomer partner in the cross link.
|
IntColumn |
IhmPredictedContactRestraint.getSeqId1() |
The sequence index for the first monomer partner in the predicted contact.
|
IntColumn |
PdbxChemCompSubcomponentStructConn.getSeqId1() |
The positional index for the first atom in the interaction.
|
IntColumn |
IhmCrossLinkList.getSeqId2() |
The sequence index for the second monomer partner in the cross link.
|
IntColumn |
IhmCrossLinkRestraint.getSeqId2() |
The sequence index for the second monomer partner in the cross link.
|
IntColumn |
IhmPredictedContactRestraint.getSeqId2() |
The sequence index for the second monomer partner in the predicted contact.
|
IntColumn |
PdbxChemCompSubcomponentStructConn.getSeqId2() |
The positional index for the first atom in the interaction.
|
IntColumn |
IhmEntityPolySegment.getSeqIdBegin() |
The leading residue index for the polymeric segment.
|
IntColumn |
IhmGaussianObjEnsemble.getSeqIdBegin() |
The leading sequence index corresponding to this gaussian object.
|
IntColumn |
IhmGaussianObjSite.getSeqIdBegin() |
The leading sequence index corresponding to this gaussian object.
|
IntColumn |
IhmPolyResidueFeature.getSeqIdBegin() |
The sequence index of the beginning residue / residue range.
|
IntColumn |
IhmResiduesNotModeled.getSeqIdBegin() |
The starting residue index for the sequence segment of missing residues.
|
IntColumn |
IhmSphereObjSite.getSeqIdBegin() |
The leading sequence index corresponding to this sphere object.
|
IntColumn |
IhmEntityPolySegment.getSeqIdEnd() |
The trailing residue index for the polymeric segment.
|
IntColumn |
IhmGaussianObjEnsemble.getSeqIdEnd() |
The trailing sequence index corresponding to this gaussian object.
|
IntColumn |
IhmGaussianObjSite.getSeqIdEnd() |
The trailing sequence index corresponding to this gaussian object.
|
IntColumn |
IhmPolyResidueFeature.getSeqIdEnd() |
The sequence index of the ending residue / residue range.
|
IntColumn |
IhmResiduesNotModeled.getSeqIdEnd() |
The ending residue index for the sequence segment of missing residues.
|
IntColumn |
IhmSphereObjSite.getSeqIdEnd() |
The trailing sequence index corresponding to this sphere object.
|
IntColumn |
PdbxEntityInstanceFeature.getSeqNum() |
Position in the sequence.
|
IntColumn |
PdbxStructChemCompDiagnostics.getSeqNum() |
Position in the sequence.
|
IntColumn |
PdbxStructChemCompFeature.getSeqNum() |
Position in the sequence.
|
IntColumn |
StructRefSeqDif.getSeqNum() |
This data item is a pointer to _entity_poly_seq.num in the
ENTITY_POLY_SEQ category.
|
IntColumn |
PdbxEntitySrcGenExpressTimepoint.getSerial() |
This items uniquely defines a timepoint within a series.
|
IntColumn |
EmMap.getSizeKb() |
map storage size in Kilobytes (before compression)
|
IntColumn |
IhmHydroxylRadicalFpRestraint.getSoftwareId() |
Identifier to the software used to obtain the restraint.
|
IntColumn |
IhmModelingPostProcess.getSoftwareId() |
Identifier to the software used in the post processing step.
|
IntColumn |
IhmModelingProtocolDetails.getSoftwareId() |
Identifier to the software used in the modeling protocol step.
|
IntColumn |
IhmPredictedContactRestraint.getSoftwareId() |
Identifier to the software used to obtain the predicted contacts dataset.
|
IntColumn |
IhmStartingComputationalModels.getSoftwareId() |
An identifier to the software used in computational modeling.
|
IntColumn |
PdbxNmrChemShiftSoftware.getSoftwareId() |
Pointer to '_pdbx_nmr_software.ordinal'
|
IntColumn |
PdbxNmrSpectralPeakSoftware.getSoftwareId() |
Pointer to '_pdbx_nmr_software.ordinal'
|
IntColumn |
PdbxNmrConstraintFile.getSoftwareOrdinal() |
Pointer to _software.ordinal
|
IntColumn |
PdbxNmrRefine.getSoftwareOrdinal() |
Pointer to _software.ordinal
|
IntColumn |
PdbxNmrSoftwareTask.getSoftwareOrdinal() |
Pointer to _software.ordinal
|
IntColumn |
PdbxNmrChemShiftExperiment.getSolutionId() |
Pointer to '_pdbx_nmr_exptl_sample.solution_id'
|
IntColumn |
PdbxNmrSpectralPeakList.getSolutionId() |
Pointer to '_pdbx_nmr_exptl_sample.solution_id'
|
IntColumn |
PdbxDepuiValidationStatusFlags.getSolventOutliers() |
Count of solvent atoms with anonalous positions.
|
IntColumn |
PdbxReferenceMoleculeFeatures.getSourceOrdinal() |
The value of _pdbx_reference_molecule_features.source_ordinal provides
the priority order of features from a particular source or database.
|
IntColumn |
Em3dCrystalEntity.getSpaceGroupNum() |
Space group number.
|
IntColumn |
EmMap.getSpacingX() |
The number of intervals per cell repeat in X.
|
IntColumn |
EmMap.getSpacingY() |
The number of intervals per cell repeat in Y.
|
IntColumn |
EmMap.getSpacingZ() |
The number of intervals per cell repeat in Z.
|
IntColumn |
PdbxNmrSpectralDim.getSpectralPeakListId() |
Pointer to '_pdbx_nmr_spectral_peak_list.id'
|
IntColumn |
PdbxNmrSpectralPeakSoftware.getSpectralPeakListId() |
Pointer to '_pdbx_nmr_spectral_peak_list.id'
|
IntColumn |
PdbxNmrExptl.getSpectrometerId() |
Pointer to '_pdbx_nmr_spectrometer.spectrometer_id'
|
IntColumn |
PdbxEntitySrcGenDepositorInfo.getSrcId() |
This data item is an ordinal identifier for entity_src_gen data records.
|
IntColumn |
IhmStartingComparativeModels.getStartingModelSeqIdBegin() |
The starting residue index of the starting model.
|
IntColumn |
IhmStartingComparativeModels.getStartingModelSeqIdEnd() |
The ending residue index of the starting model.
|
IntColumn |
IhmStartingModelDetails.getStartingModelSequenceOffset() |
The offset in residue numbering between the starting model and the deposited I/H model, if applicable.
|
IntColumn |
PdbxConstructFeature.getStartSeq() |
The sequence position at which the feature begins
|
IntColumn |
IhmMultiStateModeling.getStateGroupId() |
An identifier for a collections of states in the multi-state modeling.
|
IntColumn |
IhmMultiStateModelGroupLink.getStateId() |
An identifier for the state.
|
IntColumn |
IhmMultiStateModeling.getStateId() |
A unique identifier for a particular state in the multi-state modeling.
|
IntColumn |
IhmModelingPostProcess.getStepId() |
In a multi-step process, this identifier denotes the particular
step in the post modeling analysis.
|
IntColumn |
IhmModelingProtocolDetails.getStepId() |
An index for a particular step within the modeling protocol.
|
IntColumn |
IhmOrderedEnsemble.getStepId() |
Identifier for a particular step in the ordered process.
|
IntColumn |
PdbxEntitySrcGenCharacter.getStepId() |
This item is the unique identifier for the step whose product
has been characterised.
|
IntColumn |
PdbxEntitySrcGenChrom.getStepId() |
This item is the unique identifier for this chromatography step.
|
IntColumn |
PdbxEntitySrcGenClone.getStepId() |
This item is the unique identifier for this cloning step.
|
IntColumn |
PdbxEntitySrcGenCloneLigation.getStepId() |
This item is a pointer to _pdbx_entity_src_gen_clone.step_id in the
PDBX_ENTITY_SRC_GEN_CLONE category.
|
IntColumn |
PdbxEntitySrcGenCloneRecombination.getStepId() |
This item is a pointer to _pdbx_entity_src_gen_clone.step_id in the
PDBX_ENTITY_SRC_GEN_CLONE category.
|
IntColumn |
PdbxEntitySrcGenExpress.getStepId() |
This item is the unique identifier for this expression step.
|
IntColumn |
PdbxEntitySrcGenExpressTimepoint.getStepId() |
This item is a pointer to _pdbx_entity_src_gen_express.step_id
|
IntColumn |
PdbxEntitySrcGenFract.getStepId() |
This item is the unique identifier for this fractionation step.
|
IntColumn |
PdbxEntitySrcGenLysis.getStepId() |
This item is the unique identifier for this lysis step.
|
IntColumn |
PdbxEntitySrcGenProdDigest.getStepId() |
This item is the unique identifier for this digestion step.
|
IntColumn |
PdbxEntitySrcGenProdOther.getStepId() |
This item is the unique identifier for this process step.
|
IntColumn |
PdbxEntitySrcGenProdOtherParameter.getStepId() |
This item is a pointer to _pdbx_entity_src_gen_prod_other.step_id
|
IntColumn |
PdbxEntitySrcGenProdPcr.getStepId() |
This item is the unique identifier for this PCR step.
|
IntColumn |
PdbxEntitySrcGenProteolysis.getStepId() |
This item is the unique identifier for this tag removal step.
|
IntColumn |
PdbxEntitySrcGenPure.getStepId() |
This item unique identifier the production step.
|
IntColumn |
PdbxEntitySrcGenRefold.getStepId() |
This item is the unique identifier for this refolding step.
|
IntColumn |
NdbStructNaBasePairStep.getStepNumber() |
The sequence number of this step in the step sequence.
|
IntColumn |
Ihm2demClassAverageRestraint.getStructAssemblyId() |
An indicator to whether the whole assembly that is modeled is fit into the image
or if only a subset of the structural assembly is fit into the image.
|
IntColumn |
Ihm3demRestraint.getStructAssemblyId() |
An indicator to whether the whole assembly that is modeled is fit into the 3DEM map
or if only a subset of the structural assembly is fit into the map.
|
IntColumn |
IhmModelingPostProcess.getStructAssemblyId() |
An index for the structural assembly being processed.
|
IntColumn |
IhmModelingProtocolDetails.getStructAssemblyId() |
An index for the structural assembly being modeled.
|
IntColumn |
IhmSasRestraint.getStructAssemblyId() |
An indicator to whether the whole assembly that is modeled is fit into the SAS data
or if only a subset of the structural assembly is fit into the data.
|
IntColumn |
Refln.getSymmetryEpsilon() |
The symmetry reinforcement factor corresponding to the number of
times the reflection indices are generated identically from the
space-group symmetry operations.
|
IntColumn |
AtomSite.getSymmetryMultiplicity() |
The multiplicity of a site due to the space-group symmetry as is
given in International Tables for Crystallography Vol.
|
IntColumn |
Refln.getSymmetryMultiplicity() |
The number of symmetry-equivalent reflections.
|
IntColumn |
PdbxColumninfo.getTableSerialNo() |
SQL table serial number.
|
IntColumn |
PdbxTableinfo.getTableSerialNo() |
SQL table serial number.
|
IntColumn |
EmCrystalFormation.getTemperature() |
The value of the temperature in degrees Kelvin used for
growing the crystals.
|
IntColumn |
EmFocusedIonBeam.getTemperature() |
Temperature of the sample during milling, in degrees Kelvin
|
IntColumn |
EmUltramicrotomy.getTemperature() |
Temperature of the sample during microtome sectioning, in degrees Kelvin
|
IntColumn |
IhmStartingComparativeModels.getTemplateDatasetListId() |
The dataset list id corresponding to the template used to obtain the comparative model.
|
IntColumn |
IhmStartingComparativeModels.getTemplateSeqIdBegin() |
The starting residue index of the template.
|
IntColumn |
IhmStartingComparativeModels.getTemplateSeqIdEnd() |
The ending residue index of the template.
|
IntColumn |
EmCrystalFormation.getTime() |
Time period for array crystallization, in time unit indicated (min, hr, day, month, year)
|
IntColumn |
EmGridPretreatment.getTime() |
Time period for glow discharge of the em grid, in seconds
|
IntColumn |
PdbxEntitySrcGenCloneLigation.getTime() |
The duration of the ligation reaction in minutes.
|
IntColumn |
PdbxEntitySrcGenExpressTimepoint.getTime() |
The time in hours after induction/transformation/transfection at which
the optical density of the culture was measured.
|
IntColumn |
PdbxDccDensity.getTlsGroupNumber() |
Number of TLS groups used in refinement.
|
IntColumn |
IhmGeometricObjectAxis.getTransformationId() |
Identifier to the description of the transformation.
|
IntColumn |
IhmGeometricObjectPlane.getTransformationId() |
Identifier to the description of the transformation.
|
IntColumn |
IhmGeometricObjectSphere.getTransformationId() |
Identifier to the description of the transformation.
|
IntColumn |
IhmGeometricObjectTorus.getTransformationId() |
Identifier to the description of the transformation.
|
IntColumn |
IhmRelatedDatasets.getTransformationId() |
A pointer to the transformation matrix, if applicable.
|
IntColumn |
EmVirusShell.getTriangulation() |
The triangulation number (T number) is a geometric
concept that refers to the organisation of subunits within the icosahedron.
|
IntColumn |
PdbxColumninfo.getType() |
SQL column type.
|
IntColumn |
PdbxTableinfo.getType() |
SQL table type.
|
IntColumn |
GeomBond.getValence() |
The bond valence calculated from _geom_bond.dist.
|
IntColumn |
EmFocusedIonBeam.getVoltage() |
Voltage applied to the ion source, in kilovolts
|
IntColumn |
PdbxDccDensity.getWorkingSetCount() |
The number of unique reflections for refinement (working set)
reported in the model file.
|
IntColumn |
PdbxColumninfo.getWWWReportCriteria() |
SQL column visibility in WWW reports queries.
|
IntColumn |
PdbxTableinfo.getWWWReportCriteria() |
SQL table visibility in WWW reports queries.
|
IntColumn |
PdbxColumninfo.getWWWSelectionCriteria() |
SQL column visibility in WWW selection querires.
|
IntColumn |
PdbxTableinfo.getWWWSelectionCriteria() |
SQL table visibility in WWW selection querires.
|
IntColumn |
PdbxSerialCrystallographyDataReduction.getXfelPulseEvents() |
For FEL experiments, the number of pulse events in the dataset.
|
IntColumn |
Citation.getYear() |
The year of the citation; relevant for journal articles, books
and book chapters.
|
IntColumn |
Cell.getZPDB() |
The number of the polymeric chains in a unit cell.
|