Package org.rcsb.cif.schema.core

Class DiffrnRefln

java.lang.Object
org.rcsb.cif.schema.DelegatingCategory.DelegatingCifCoreCategory
org.rcsb.cif.schema.core.DiffrnRefln
All Implemented Interfaces:
Category
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class DiffrnRefln
extends DelegatingCategory.DelegatingCifCoreCategory
The CATEGORY of data items which specify the reflection measurements, prior to data reduction and merging.

  • Constructor Details

  • Method Details

    • getAngleChi

      public FloatColumn getAngleChi()
      Diffractometer angle at which the intensity is measured. This was calculated from the specified orientation matrix and the original measured cell dimensions before any subsequent transformations.
      Returns:
      FloatColumn

    • getAngleKappa

      public FloatColumn getAngleKappa()
      Diffractometer angle at which the intensity is measured. This was calculated from the specified orientation matrix and the original measured cell dimensions before any subsequent transformations.
      Returns:
      FloatColumn

    • getAngleOmega

      public FloatColumn getAngleOmega()
      Diffractometer angle at which the intensity is measured. This was calculated from the specified orientation matrix and the original measured cell dimensions before any subsequent transformations.
      Returns:
      FloatColumn

    • getAnglePhi

      public FloatColumn getAnglePhi()
      Diffractometer angle at which the intensity is measured. This was calculated from the specified orientation matrix and the original measured cell dimensions before any subsequent transformations.
      Returns:
      FloatColumn

    • getAnglePsi

      public FloatColumn getAnglePsi()
      Diffractometer angle at which the intensity is measured. This was calculated from the specified orientation matrix and the original measured cell dimensions before any subsequent transformations.
      Returns:
      FloatColumn

    • getAngleTheta

      public FloatColumn getAngleTheta()
      Diffractometer angle at which the intensity is measured. This was calculated from the specified orientation matrix and the original measured cell dimensions before any subsequent transformations.
      Returns:
      FloatColumn

    • getAttenuatorCode

      public StrColumn getAttenuatorCode()
      Code identifying any attenuator setting for this reflection.
      Returns:
      StrColumn

    • getClassCode

      public StrColumn getClassCode()
      Code for reflection class, if assigned. e.g. modulated structures
      Returns:
      StrColumn

    • getCountsBg1

      public IntColumn getCountsBg1()
      The set of data items which specify the diffractometer counts. Background counts before the peak, background after the peak, net counts after background removed, counts for peak scan or position, and the total counts (background plus peak).
      Returns:
      IntColumn

    • getCountsBg2

      public IntColumn getCountsBg2()
      The set of data items which specify the diffractometer counts. Background counts before the peak, background after the peak, net counts after background removed, counts for peak scan or position, and the total counts (background plus peak).
      Returns:
      IntColumn

    • getCountsNet

      public IntColumn getCountsNet()
      The set of data items which specify the diffractometer counts. Background counts before the peak, background after the peak, net counts after background removed, counts for peak scan or position, and the total counts (background plus peak).
      Returns:
      IntColumn

    • getCountsPeak

      public IntColumn getCountsPeak()
      The set of data items which specify the diffractometer counts. Background counts before the peak, background after the peak, net counts after background removed, counts for peak scan or position, and the total counts (background plus peak).
      Returns:
      IntColumn

    • getCountsTotal

      public IntColumn getCountsTotal()
      The set of data items which specify the diffractometer counts. Background counts before the peak, background after the peak, net counts after background removed, counts for peak scan or position, and the total counts (background plus peak).
      Returns:
      IntColumn

    • getDetectSlitHoriz

      public FloatColumn getDetectSlitHoriz()
      Total slit aperture angle in the diffraction plane.
      Returns:
      FloatColumn

    • getDetectSlitVert

      public FloatColumn getDetectSlitVert()
      Total slit aperture angle perpendicular to the diffraction plane.
      Returns:
      FloatColumn

    • getElapsedTime

      public FloatColumn getElapsedTime()
      Elapsed time from the start to the end of the intensity measurement.
      Returns:
      FloatColumn

    • getHkl

      public IntColumn getHkl()
      Miller indices of a measured reflection. These need not match the _refln.hkl values if a transformation of the original measured cell has taken place.
      Returns:
      IntColumn

    • getIndexH

      public IntColumn getIndexH()
      The index of a reciprocal space vector.
      Returns:
      IntColumn

    • getIndexK

      public IntColumn getIndexK()
      The index of a reciprocal space vector.
      Returns:
      IntColumn

    • getIndexL

      public IntColumn getIndexL()
      The index of a reciprocal space vector.
      Returns:
      IntColumn

    • getIntensityNet

      public FloatColumn getIntensityNet()
      Net intensity calculated from the diffraction counts after the attenuator and standard scales have been applied.
      Returns:
      FloatColumn

    • getScaleGroupCode

      public StrColumn getScaleGroupCode()
      Code identifying the scale applying to this reflection.
      Returns:
      StrColumn

    • getScanMode

      public StrColumn getScanMode()
      Code identifying the mode of scanning with a diffractometer. See also _diffrn_refln.scan_width and _diffrn_refln.scan_mode_backgd.
      Returns:
      StrColumn

    • getScanModeBackgd

      public StrColumn getScanModeBackgd()
      Code identifying mode of scanning to measure the background intensity.
      Returns:
      StrColumn

    • getScanRate

      public FloatColumn getScanRate()
      Angular rate of scanning a reflection to measure the intensity.
      Returns:
      FloatColumn

    • getScanTimeBackgd

      public FloatColumn getScanTimeBackgd()
      Time spent measuring background counts.
      Returns:
      FloatColumn

    • getScanWidth

      public FloatColumn getScanWidth()
      Angular scan width when measuring the peak intensity.
      Returns:
      FloatColumn

    • getStandardCode

      public StrColumn getStandardCode()
      Code identifying reflections measured repeated as standard intensity. Must match a _diffrn_standard_refln.code values OR set to '.' if it was not used as a intensity standard.
      Returns:
      StrColumn

    • getWavelength

      public FloatColumn getWavelength()
      Mean wavelength of radiation used to measure this intensity.
      Returns:
      FloatColumn

    • getWavelengthId

      public StrColumn getWavelengthId()
      Code identifying the wavelength in the diffrn_radiation_wavelength list.
      Returns:
      StrColumn

    • getIntensitySigma

      public FloatColumn getIntensitySigma()
      Standard uncertainty of the net intensity calculated from the diffraction counts after the attenuator and standard scales have been applied.
      Returns:
      FloatColumn

    • getIntensityU

      public FloatColumn getIntensityU()
      Standard uncertainty of the net intensity calculated from the diffraction counts after the attenuator and standard scales have been applied.
      Returns:
      FloatColumn

    • getIntensityNetSu

      public FloatColumn getIntensityNetSu()
      Standard uncertainty of the net intensity calculated from the diffraction counts after the attenuator and standard scales have been applied.
      Returns:
      FloatColumn

    • getSintOverLambda

      public FloatColumn getSintOverLambda()
      (sin theta)/lambda value for this reflection.
      Returns:
      FloatColumn

    • getSinThetaOverLambda

      public FloatColumn getSinThetaOverLambda()
      (sin theta)/lambda value for this reflection.
      Returns:
      FloatColumn