Package org.rcsb.cif.schema.mm

Class ChemicalConnBond

java.lang.Object

org.rcsb.cif.schema.DelegatingCategory

org.rcsb.cif.schema.mm.ChemicalConnBond

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class ChemicalConnBond
extends DelegatingCategory

Data items in the CHEMICAL_CONN_BOND category would not, in general, be used in a macromolecular CIF. See instead the ENTITY data items. Data items in the CHEMICAL_CONN_ATOM and CHEMICAL_CONN_BOND categories record details about the two-dimensional (2D) chemical structure of the molecular species. They allow a 2D chemical diagram to be reconstructed for use in a publication or in a database search for structural and substructural relationships. The CHEMICAL_CONN_BOND data items specify the connections between the atoms in the CHEMICAL_CONN_ATOM list and the nature of the chemical bond between these atoms.

Nested Class Summary

Nested classes/interfaces inherited from class org.rcsb.cif.schema.DelegatingCategory

DelegatingCategory.DelegatingCifCoreCategory

Nested classes/interfaces inherited from interface org.rcsb.cif.model.Category

Category.EmptyCategory

Field Summary

Fields inherited from class org.rcsb.cif.schema.DelegatingCategory

delegate

Constructor Summary

Constructors

Constructor	Description
ChemicalConnBond(Category delegate)

Method Summary

Modifier and Type	Method	Description
protected Column	createDelegate(String columnName, Column column)
IntColumn	getAtom1()	This data item is a pointer to _chemical_conn_atom.number in the CHEMICAL_CONN_ATOM category.
IntColumn	getAtom2()	This data item is a pointer to _chemical_conn_atom.number in the CHEMICAL_CONN_ATOM category.
StrColumn	getType()	The chemical bond type associated with the connection between the two sites _chemical_conn_bond.atom_1 and _chemical_conn_bond.atom_2.

Methods inherited from class org.rcsb.cif.schema.DelegatingCategory

getCategoryName, getColumn, getColumns, getRowCount

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columns, getColumn, isDefined

Constructor Details

ChemicalConnBond

public ChemicalConnBond(Category delegate)

Method Details

createDelegate

protected Column createDelegate(String columnName, Column column)

Overrides:

createDelegate in class DelegatingCategory

getAtom1

public IntColumn getAtom1()

This data item is a pointer to _chemical_conn_atom.number in the CHEMICAL_CONN_ATOM category.

Returns:

IntColumn

getAtom2

public IntColumn getAtom2()

This data item is a pointer to _chemical_conn_atom.number in the CHEMICAL_CONN_ATOM category.

Returns:

IntColumn

getType

public StrColumn getType()

The chemical bond type associated with the connection between the two sites _chemical_conn_bond.atom_1 and _chemical_conn_bond.atom_2.

Returns:

StrColumn