Package org.rcsb.cif.schema.mm

Class Citation

java.lang.Object
org.rcsb.cif.schema.DelegatingCategory
org.rcsb.cif.schema.mm.Citation
All Implemented Interfaces:
Category
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class Citation
extends DelegatingCategory
Data items in the CITATION category record details about the literature cited as being relevant to the contents of the data block.

  • Constructor Details

  • Method Details

    • createDelegate

      protected Column createDelegate​(String columnName, Column column)
      Overrides:
      createDelegate in class DelegatingCategory

    • getAbstract

      public StrColumn getAbstract()
      Abstract for the citation. This is used most when the citation is extracted from a bibliographic database that contains full text or abstract information.
      Returns:
      StrColumn

    • getAbstractIdCAS

      public StrColumn getAbstractIdCAS()
      The Chemical Abstracts Service (CAS) abstract identifier; relevant for journal articles.
      Returns:
      StrColumn

    • getBookIdISBN

      public StrColumn getBookIdISBN()
      The International Standard Book Number (ISBN) code assigned to the book cited; relevant for books or book chapters.
      Returns:
      StrColumn

    • getBookPublisher

      public StrColumn getBookPublisher()
      The name of the publisher of the citation; relevant for books or book chapters.
      Returns:
      StrColumn

    • getBookPublisherCity

      public StrColumn getBookPublisherCity()
      The location of the publisher of the citation; relevant for books or book chapters.
      Returns:
      StrColumn

    • getBookTitle

      public StrColumn getBookTitle()
      The title of the book in which the citation appeared; relevant for books or book chapters.
      Returns:
      StrColumn

    • getCoordinateLinkage

      public StrColumn getCoordinateLinkage()
      _citation.coordinate_linkage states whether this citation is concerned with precisely the set of coordinates given in the data block. If, for instance, the publication described the same structure, but the coordinates had undergone further refinement prior to the creation of the data block, the value of this data item would be 'no'.
      Returns:
      StrColumn

    • getCountry

      public StrColumn getCountry()
      The country/region of publication; relevant for books and book chapters.
      Returns:
      StrColumn

    • getDatabaseIdMedline

      public IntColumn getDatabaseIdMedline()
      Accession number used by Medline to categorize a specific bibliographic entry.
      Returns:
      IntColumn

    • getDetails

      public StrColumn getDetails()
      A description of special aspects of the relationship of the contents of the data block to the literature item cited.
      Returns:
      StrColumn

    • getId

      public StrColumn getId()
      The value of _citation.id must uniquely identify a record in the CITATION list. The _citation.id 'primary' should be used to indicate the citation that the author(s) consider to be the most pertinent to the contents of the data block. Note that this item need not be a number; it can be any unique identifier.
      Returns:
      StrColumn

    • getJournalAbbrev

      public StrColumn getJournalAbbrev()
      Abbreviated name of the cited journal as given in the Chemical Abstracts Service Source Index.
      Returns:
      StrColumn

    • getJournalIdASTM

      public StrColumn getJournalIdASTM()
      The American Society for Testing and Materials (ASTM) code assigned to the journal cited (also referred to as the CODEN designator of the Chemical Abstracts Service); relevant for journal articles.
      Returns:
      StrColumn

    • getJournalIdCSD

      public StrColumn getJournalIdCSD()
      The Cambridge Structural Database (CSD) code assigned to the journal cited; relevant for journal articles. This is also the system used at the Protein Data Bank (PDB).
      Returns:
      StrColumn

    • getJournalIdISSN

      public StrColumn getJournalIdISSN()
      The International Standard Serial Number (ISSN) code assigned to the journal cited; relevant for journal articles.
      Returns:
      StrColumn

    • getJournalFull

      public StrColumn getJournalFull()
      Full name of the cited journal; relevant for journal articles.
      Returns:
      StrColumn

    • getJournalIssue

      public StrColumn getJournalIssue()
      Issue number of the journal cited; relevant for journal articles.
      Returns:
      StrColumn

    • getJournalVolume

      public StrColumn getJournalVolume()
      Volume number of the journal cited; relevant for journal articles.
      Returns:
      StrColumn

    • getLanguage

      public StrColumn getLanguage()
      Language in which the cited article is written.
      Returns:
      StrColumn

    • getPageFirst

      public StrColumn getPageFirst()
      The first page of the citation; relevant for journal articles, books and book chapters.
      Returns:
      StrColumn

    • getPageLast

      public StrColumn getPageLast()
      The last page of the citation; relevant for journal articles, books and book chapters.
      Returns:
      StrColumn

    • getTitle

      public StrColumn getTitle()
      The title of the citation; relevant for journal articles, books and book chapters.
      Returns:
      StrColumn

    • getYear

      public IntColumn getYear()
      The year of the citation; relevant for journal articles, books and book chapters.
      Returns:
      IntColumn

    • getDatabaseIdCSD

      public StrColumn getDatabaseIdCSD()
      Identifier ('refcode') of the database record in the Cambridge Structural Database that contains details of the cited structure.
      Returns:
      StrColumn

    • getPdbxDatabaseIdDOI

      public StrColumn getPdbxDatabaseIdDOI()
      Document Object Identifier used by doi.org to uniquely specify bibliographic entry.
      Returns:
      StrColumn

    • getPdbxDatabaseIdPubMed

      public IntColumn getPdbxDatabaseIdPubMed()
      Ascession number used by PubMed to categorize a specific bibliographic entry.
      Returns:
      IntColumn

    • getUnpublishedFlag

      public StrColumn getUnpublishedFlag()
      Flag to indicate that this citation will not be published.
      Returns:
      StrColumn