Package org.rcsb.cif.schema.mm

Class Em3dFitting

java.lang.Object
org.rcsb.cif.schema.DelegatingCategory
org.rcsb.cif.schema.mm.Em3dFitting
All Implemented Interfaces:
Category
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class Em3dFitting
extends DelegatingCategory
Data items in the 3D_FITTING category record details of the method of fitting atomic coordinates from a PDB file into a 3d-em volume map file

  • Constructor Details

  • Method Details

    • createDelegate

      protected Column createDelegate​(String columnName, Column column)
      Overrides:
      createDelegate in class DelegatingCategory

    • getId

      public StrColumn getId()
      The value of _em_3d_fitting.id must uniquely identify a fitting procedure of atomic coordinates into 3dem reconstructed map volume.
      Returns:
      StrColumn

    • getEntryId

      public StrColumn getEntryId()
      This data item is a pointer to _entry_id in the ENTRY category.
      Returns:
      StrColumn

    • getMethod

      public StrColumn getMethod()
      The method used to fit atomic coordinates into the 3dem reconstructed map.
      Returns:
      StrColumn

    • getTargetCriteria

      public StrColumn getTargetCriteria()
      The measure used to assess quality of fit of the atomic coordinates in the 3DEM map volume.
      Returns:
      StrColumn

    • getSoftwareName

      public StrColumn getSoftwareName()
      The software used for fitting atomic coordinates to the map.
      Returns:
      StrColumn

    • getDetails

      public StrColumn getDetails()
      Any additional details regarding fitting of atomic coordinates into the 3DEM volume, including data and considerations from other methods used in computation of the model.
      Returns:
      StrColumn

    • getOverallBValue

      public FloatColumn getOverallBValue()
      The overall B (temperature factor) value for the 3d-em volume.
      Returns:
      FloatColumn

    • getRefSpace

      public StrColumn getRefSpace()
      A flag to indicate whether fitting was carried out in real or reciprocal refinement space.
      Returns:
      StrColumn

    • getRefProtocol

      public StrColumn getRefProtocol()
      The refinement protocol used.
      Returns:
      StrColumn