Package org.rcsb.cif.schema.mm

Class EmImaging

java.lang.Object
org.rcsb.cif.schema.DelegatingCategory
org.rcsb.cif.schema.mm.EmImaging
All Implemented Interfaces:
Category
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class EmImaging
extends DelegatingCategory
Data items in the EM_IMAGING category record details about the parameters used in imaging the sample in the electron microscope.

  • Constructor Details

  • Method Details

    • createDelegate

      protected Column createDelegate​(String columnName, Column column)
      Overrides:
      createDelegate in class DelegatingCategory

    • getEntryId

      public StrColumn getEntryId()
      This data item is a pointer to _entry.id in the ENTRY category.
      Returns:
      StrColumn

    • getId

      public StrColumn getId()
      The value of _em_imaging.id must uniquely identify each imaging experiment.
      Returns:
      StrColumn

    • getAstigmatism

      public StrColumn getAstigmatism()
      astigmatism
      Returns:
      StrColumn

    • getElectronBeamTiltParams

      public StrColumn getElectronBeamTiltParams()
      electron beam tilt params
      Returns:
      StrColumn

    • getResidualTilt

      public FloatColumn getResidualTilt()
      residual tilt of the electron beam
      Returns:
      FloatColumn

    • getSampleSupportId

      public StrColumn getSampleSupportId()
      This data item is a pointer to _em_sample_support.id in the EM_SAMPLE_SUPPORT category.
      Returns:
      StrColumn

    • getDetectorId

      public StrColumn getDetectorId()
      The value of _em_imaging.detector_id must uniquely identify the type of detector used in the experiment.
      Returns:
      StrColumn

    • getScansId

      public StrColumn getScansId()
      The value of _em_imaging.scans_id must uniquely identify the image_scans used in the experiment.
      Returns:
      StrColumn

    • getMicroscopeId

      public StrColumn getMicroscopeId()
      This data item is a pointer to _em_microscope.id in the EM_MICROSCOPE category.
      Returns:
      StrColumn

    • getMicroscopeModel

      public StrColumn getMicroscopeModel()
      The name of the model of microscope.
      Returns:
      StrColumn

    • getSpecimenHolderType

      public StrColumn getSpecimenHolderType()
      The type of specimen holder used during imaging.
      Returns:
      StrColumn

    • getSpecimenHolderModel

      public StrColumn getSpecimenHolderModel()
      The name of the model of specimen holder used during imaging.
      Returns:
      StrColumn

    • getDetails

      public StrColumn getDetails()
      Any additional imaging details.
      Returns:
      StrColumn

    • getDate

      public StrColumn getDate()
      Date (YYYY-MM-DD) of imaging experiment or the date at which a series of experiments began.
      Returns:
      StrColumn

    • getAcceleratingVoltage

      public IntColumn getAcceleratingVoltage()
      A value of accelerating voltage (in kV) used for imaging.
      Returns:
      IntColumn

    • getIlluminationMode

      public StrColumn getIlluminationMode()
      The mode of illumination.
      Returns:
      StrColumn

    • getMode

      public StrColumn getMode()
      The mode of imaging.
      Returns:
      StrColumn

    • getNominalCs

      public FloatColumn getNominalCs()
      The spherical aberration coefficient (Cs) in millimeters, of the objective lens.
      Returns:
      FloatColumn

    • getNominalDefocusMin

      public FloatColumn getNominalDefocusMin()
      The minimum defocus value of the objective lens (in nanometers) used to obtain the recorded images.
      Returns:
      FloatColumn

    • getNominalDefocusMax

      public FloatColumn getNominalDefocusMax()
      The maximum defocus value of the objective lens (in nanometers) used to obtain the recorded images.
      Returns:
      FloatColumn

    • getCalibratedDefocusMin

      public FloatColumn getCalibratedDefocusMin()
      The minimum defocus value of the objective lens (in nanometers) used to obtain the recorded images.
      Returns:
      FloatColumn

    • getCalibratedDefocusMax

      public FloatColumn getCalibratedDefocusMax()
      The maximum defocus value of the objective lens (in nanometers) used to obtain the recorded images.
      Returns:
      FloatColumn

    • getTiltAngleMin

      public FloatColumn getTiltAngleMin()
      The minimum angle at which the specimen was tilted to obtain recorded images.
      Returns:
      FloatColumn

    • getTiltAngleMax

      public FloatColumn getTiltAngleMax()
      The maximum angle at which the specimen was tilted to obtain recorded images.
      Returns:
      FloatColumn

    • getNominalMagnification

      public IntColumn getNominalMagnification()
      The magnification indicated by the microscope readout.
      Returns:
      IntColumn

    • getCalibratedMagnification

      public IntColumn getCalibratedMagnification()
      The magnification value obtained for a known standard just prior to, during or just after the imaging experiment.
      Returns:
      IntColumn

    • getElectronSource

      public StrColumn getElectronSource()
      The source of electrons. The electron gun.
      Returns:
      StrColumn

    • getElectronDose

      public FloatColumn getElectronDose()
      The electron dose received by the specimen (electrons per square angstrom).
      Returns:
      FloatColumn

    • getEnergyFilter

      public StrColumn getEnergyFilter()
      The type of energy filter spectrometer apparatus.
      Returns:
      StrColumn

    • getEnergyWindow

      public StrColumn getEnergyWindow()
      The energy filter range in electron volts (eV)set by spectrometer.
      Returns:
      StrColumn

    • getCitationId

      public StrColumn getCitationId()
      This data item is a pointer to _citation.id in the CITATION category.
      Returns:
      StrColumn

    • getTemperature

      public FloatColumn getTemperature()
      The mean specimen stage temperature (degrees Kelvin) during imaging in the microscope.
      Returns:
      FloatColumn

    • getDetectorDistance

      public FloatColumn getDetectorDistance()
      The camera length (in millimeters). The camera length is the product of the objective focal length and the combined magnification of the intermediate and projector lenses when the microscope is operated in the diffraction mode.
      Returns:
      FloatColumn

    • getRecordingTemperatureMinimum

      public FloatColumn getRecordingTemperatureMinimum()
      The specimen temperature minimum (degrees Kelvin) for the duration of imaging.
      Returns:
      FloatColumn

    • getRecordingTemperatureMaximum

      public FloatColumn getRecordingTemperatureMaximum()
      The specimen temperature maximum (degrees Kelvin) for the duration of imaging.
      Returns:
      FloatColumn

    • getAlignmentProcedure

      public StrColumn getAlignmentProcedure()
      microscope alignment procedure
      Returns:
      StrColumn

    • getC2ApertureDiameter

      public FloatColumn getC2ApertureDiameter()
      The open diameter of the c2 condenser lens, in microns.
      Returns:
      FloatColumn

    • getSpecimenId

      public StrColumn getSpecimenId()
      Foreign key to the EM_SPECIMEN category
      Returns:
      StrColumn

    • getCryogen

      public StrColumn getCryogen()
      Cryogen type used to maintain the specimen stage temperature during imaging in the microscope.
      Returns:
      StrColumn