Package org.rcsb.cif.schema.mm

Class EmStartModel

java.lang.Object

org.rcsb.cif.schema.DelegatingCategory

org.rcsb.cif.schema.mm.EmStartModel

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class EmStartModel
extends DelegatingCategory

The startup model employed to begin refinement of the parameters for a 3DEM reconstruction

Nested Class Summary

Nested classes/interfaces inherited from class org.rcsb.cif.schema.DelegatingCategory

DelegatingCategory.DelegatingCifCoreCategory

Nested classes/interfaces inherited from interface org.rcsb.cif.model.Category

Category.EmptyCategory

Field Summary

Fields inherited from class org.rcsb.cif.schema.DelegatingCategory

delegate

Constructor Summary

Constructors

Constructor	Description
EmStartModel(Category delegate)

Method Summary

Modifier and Type	Method	Description
protected Column	createDelegate(String columnName, Column column)
StrColumn	getDetails()	Any additional details about generating the startup model
StrColumn	getEmdbId()	EMDB id of the map used as the startup model
StrColumn	getId()	Primary key
StrColumn	getImageProcessingId()	Foreign key to the EM_IMAGE_PROCESSING category
StrColumn	getInsilicoModel()	Description of the "in silico" model used to generate the startup model
FloatColumn	getOrthogonalTiltAngle1()	Tilt angle for the 1st image set of the orthogonal tilt pairs
FloatColumn	getOrthogonalTiltAngle2()	Tilt angle for the 2nd image set of the orthogonal tilt pairs
IntColumn	getOrthogonalTiltNumImages()	number of images used to generate the orthogonal tilt startup model
StrColumn	getOther()	Description of other method/source used to generate the startup model
StrColumn	getPdbId()	PDB id of the model coordinates used to generate the startup model
FloatColumn	getRandomConicalTiltAngle()	Angular difference between the conical tilt images used to generate the startup model
IntColumn	getRandomConicalTiltNumImages()	number of images used to generate the random conical tilt startup model
StrColumn	getType()	Type of startup model (map density) used to initiate the reconstruction

Methods inherited from class org.rcsb.cif.schema.DelegatingCategory

getCategoryName, getColumn, getColumns, getRowCount

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columns, getColumn, isDefined

Constructor Details

EmStartModel

public EmStartModel(Category delegate)

Method Details

createDelegate

protected Column createDelegate(String columnName, Column column)

Overrides:

createDelegate in class DelegatingCategory

getDetails

public StrColumn getDetails()

Any additional details about generating the startup model

Returns:

StrColumn

getEmdbId

public StrColumn getEmdbId()

EMDB id of the map used as the startup model

Returns:

StrColumn

getId

public StrColumn getId()

Primary key

Returns:

StrColumn

getImageProcessingId

public StrColumn getImageProcessingId()

Foreign key to the EM_IMAGE_PROCESSING category

Returns:

StrColumn

getInsilicoModel

public StrColumn getInsilicoModel()

Description of the "in silico" model used to generate the startup model

Returns:

StrColumn

getOrthogonalTiltAngle1

public FloatColumn getOrthogonalTiltAngle1()

Tilt angle for the 1st image set of the orthogonal tilt pairs

Returns:

FloatColumn

getOrthogonalTiltAngle2

public FloatColumn getOrthogonalTiltAngle2()

Tilt angle for the 2nd image set of the orthogonal tilt pairs

Returns:

FloatColumn

getOrthogonalTiltNumImages

public IntColumn getOrthogonalTiltNumImages()

number of images used to generate the orthogonal tilt startup model

Returns:

IntColumn

getOther

public StrColumn getOther()

Description of other method/source used to generate the startup model

Returns:

StrColumn

getPdbId

public StrColumn getPdbId()

PDB id of the model coordinates used to generate the startup model

Returns:

StrColumn

getRandomConicalTiltAngle

public FloatColumn getRandomConicalTiltAngle()

Angular difference between the conical tilt images used to generate the startup model

Returns:

FloatColumn

getRandomConicalTiltNumImages

public IntColumn getRandomConicalTiltNumImages()

number of images used to generate the random conical tilt startup model

Returns:

IntColumn

getType

public StrColumn getType()

Type of startup model (map density) used to initiate the reconstruction

Returns:

StrColumn