Package org.rcsb.cif.schema.mm

Class EntityPolySeq

java.lang.Object

org.rcsb.cif.schema.DelegatingCategory

org.rcsb.cif.schema.mm.EntityPolySeq

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class EntityPolySeq
extends DelegatingCategory

Data items in the ENTITY_POLY_SEQ category specify the sequence of monomers in a polymer. Allowance is made for the possibility of microheterogeneity in a sample by allowing a given sequence number to be correlated with more than one monomer ID. The corresponding ATOM_SITE entries should reflect this heterogeneity.

Nested Class Summary

Nested classes/interfaces inherited from class org.rcsb.cif.schema.DelegatingCategory

DelegatingCategory.DelegatingCifCoreCategory

Nested classes/interfaces inherited from interface org.rcsb.cif.model.Category

Category.EmptyCategory

Field Summary

Fields inherited from class org.rcsb.cif.schema.DelegatingCategory

delegate

Constructor Summary

Constructors

Constructor	Description
EntityPolySeq(Category delegate)

Method Summary

Modifier and Type	Method	Description
protected Column	createDelegate(String columnName, Column column)
StrColumn	getEntityId()	This data item is a pointer to _entity_poly.entity_id in the ENTITY_POLY category.
StrColumn	getHetero()	A flag to indicate whether this monomer in the polymer is heterogeneous in sequence.
StrColumn	getMonId()	This data item is a pointer to _chem_comp.id in the CHEM_COMP category.
IntColumn	getNum()	The value of _entity_poly_seq.num must uniquely and sequentially identify a record in the ENTITY_POLY_SEQ list.

Methods inherited from class org.rcsb.cif.schema.DelegatingCategory

getCategoryName, getColumn, getColumns, getRowCount

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columns, getColumn, isDefined

Constructor Details

EntityPolySeq

public EntityPolySeq(Category delegate)

Method Details

createDelegate

protected Column createDelegate(String columnName, Column column)

Overrides:

createDelegate in class DelegatingCategory

getEntityId

public StrColumn getEntityId()

This data item is a pointer to _entity_poly.entity_id in the ENTITY_POLY category.

Returns:

StrColumn

getHetero

public StrColumn getHetero()

A flag to indicate whether this monomer in the polymer is heterogeneous in sequence.

Returns:

StrColumn

getMonId

public StrColumn getMonId()

This data item is a pointer to _chem_comp.id in the CHEM_COMP category.

Returns:

StrColumn

getNum

public IntColumn getNum()

The value of _entity_poly_seq.num must uniquely and sequentially identify a record in the ENTITY_POLY_SEQ list. Note that this item must be a number and that the sequence numbers must progress in increasing numerical order.

Returns:

IntColumn