Package org.rcsb.cif.schema.mm

Class EntitySrcNat

java.lang.Object
org.rcsb.cif.schema.DelegatingCategory
org.rcsb.cif.schema.mm.EntitySrcNat
All Implemented Interfaces:
Category
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class EntitySrcNat
extends DelegatingCategory
Data items in the ENTITY_SRC_NAT category record details of the source from which the entity was obtained in cases where the entity was isolated directly from a natural tissue.

  • Constructor Details

  • Method Details

    • createDelegate

      protected Column createDelegate​(String columnName, Column column)
      Overrides:
      createDelegate in class DelegatingCategory

    • getCommonName

      public StrColumn getCommonName()
      The common name of the organism from which the entity was isolated.
      Returns:
      StrColumn

    • getDetails

      public StrColumn getDetails()
      A description of special aspects of the organism from which the entity was isolated.
      Returns:
      StrColumn

    • getEntityId

      public StrColumn getEntityId()
      This data item is a pointer to _entity.id in the ENTITY category.
      Returns:
      StrColumn

    • getGenus

      public StrColumn getGenus()
      The genus of the organism from which the entity was isolated.
      Returns:
      StrColumn

    • getSpecies

      public StrColumn getSpecies()
      The species of the organism from which the entity was isolated.
      Returns:
      StrColumn

    • getStrain

      public StrColumn getStrain()
      The strain of the organism from which the entity was isolated.
      Returns:
      StrColumn

    • getTissue

      public StrColumn getTissue()
      The tissue of the organism from which the entity was isolated.
      Returns:
      StrColumn

    • getTissueFraction

      public StrColumn getTissueFraction()
      The subcellular fraction of the tissue of the organism from which the entity was isolated.
      Returns:
      StrColumn

    • getPdbxOrganismScientific

      public StrColumn getPdbxOrganismScientific()
      Scientific name of the organism of the natural source.
      Returns:
      StrColumn

    • getPdbxSecretion

      public StrColumn getPdbxSecretion()
      Identifies the secretion from which the molecule was isolated.
      Returns:
      StrColumn

    • getPdbxFragment

      public StrColumn getPdbxFragment()
      A domain or fragment of the molecule.
      Returns:
      StrColumn

    • getPdbxVariant

      public StrColumn getPdbxVariant()
      Identifies the variant.
      Returns:
      StrColumn

    • getPdbxCellLine

      public StrColumn getPdbxCellLine()
      The specific line of cells.
      Returns:
      StrColumn

    • getPdbxAtcc

      public StrColumn getPdbxAtcc()
      Americal Tissue Culture Collection number.
      Returns:
      StrColumn

    • getPdbxCellularLocation

      public StrColumn getPdbxCellularLocation()
      Identifies the location inside (or outside) the cell.
      Returns:
      StrColumn

    • getPdbxOrgan

      public StrColumn getPdbxOrgan()
      Organized group of tissues that carries on a specialized function.
      Returns:
      StrColumn

    • getPdbxOrganelle

      public StrColumn getPdbxOrganelle()
      Organized structure within cell.
      Returns:
      StrColumn

    • getPdbxCell

      public StrColumn getPdbxCell()
      A particular cell type.
      Returns:
      StrColumn

    • getPdbxPlasmidName

      public StrColumn getPdbxPlasmidName()
      The plasmid containing the gene.
      Returns:
      StrColumn

    • getPdbxPlasmidDetails

      public StrColumn getPdbxPlasmidDetails()
      Details about the plasmid.
      Returns:
      StrColumn

    • getPdbxNcbiTaxonomyId

      public StrColumn getPdbxNcbiTaxonomyId()
      NCBI Taxonomy identifier for the source organism. Reference: Wheeler DL, Chappey C, Lash AE, Leipe DD, Madden TL, Schuler GD, Tatusova TA, Rapp BA (2000). Database resources of the National Center for Biotechnology Information. Nucleic Acids Res 2000 Jan 1;28(1):10-4 Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Rapp BA, Wheeler DL (2000). GenBank. Nucleic Acids Res 2000 Jan 1;28(1):15-18.
      Returns:
      StrColumn

    • getPdbxSrcId

      public IntColumn getPdbxSrcId()
      This data item is an ordinal identifier for entity_src_nat data records.
      Returns:
      IntColumn

    • getPdbxAltSourceFlag

      public StrColumn getPdbxAltSourceFlag()
      This data item identifies cases in which an alternative source modeled.
      Returns:
      StrColumn

    • getPdbxBegSeqNum

      public IntColumn getPdbxBegSeqNum()
      The beginning polymer sequence position for the polymer section corresponding to this source. A reference to the sequence position in the entity_poly category.
      Returns:
      IntColumn

    • getPdbxEndSeqNum

      public IntColumn getPdbxEndSeqNum()
      The ending polymer sequence position for the polymer section corresponding to this source. A reference to the sequence position in the entity_poly category.
      Returns:
      IntColumn

    • getPdbxCultureCollection

      public StrColumn getPdbxCultureCollection()
      Culture Collection identifier.
      Returns:
      StrColumn