Package org.rcsb.cif.schema.mm

Class GeomAngle

java.lang.Object
org.rcsb.cif.schema.DelegatingCategory
org.rcsb.cif.schema.mm.GeomAngle
All Implemented Interfaces:
Category
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class GeomAngle
extends DelegatingCategory
Data items in the GEOM_ANGLE category record details about the bond angles as calculated from the contents of the ATOM, CELL and SYMMETRY data.

  • Constructor Details

  • Method Details

    • createDelegate

      protected Column createDelegate​(String columnName, Column column)
      Overrides:
      createDelegate in class DelegatingCategory

    • getAtomSiteId1

      public StrColumn getAtomSiteId1()
      The identifier of the first of the three atom sites that define the angle. This data item is a pointer to _atom_site.id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteLabelAltId1

      public StrColumn getAtomSiteLabelAltId1()
      An optional identifier of the first of the three atom sites that define the angle. This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteLabelAtomId1

      public StrColumn getAtomSiteLabelAtomId1()
      An optional identifier of the first of the three atom sites that define the angle. This data item is a pointer to _atom_site.label_atom_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteLabelCompId1

      public StrColumn getAtomSiteLabelCompId1()
      An optional identifier of the first of the three atom sites that define the angle. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteLabelSeqId1

      public IntColumn getAtomSiteLabelSeqId1()
      An optional identifier of the first of the three atom sites that define the angle. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
      Returns:
      IntColumn

    • getAtomSiteLabelAsymId1

      public StrColumn getAtomSiteLabelAsymId1()
      An optional identifier of the first of the three atom sites that define the angle. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteId2

      public StrColumn getAtomSiteId2()
      The identifier of the second of the three atom sites that define the angle. The second atom is taken to be the apex of the angle. This data item is a pointer to _atom_site.id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteLabelAltId2

      public StrColumn getAtomSiteLabelAltId2()
      An optional identifier of the second of the three atom sites that define the angle. This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteLabelAtomId2

      public StrColumn getAtomSiteLabelAtomId2()
      An optional identifier of the second of the three atom sites that define the angle. This data item is a pointer to _atom_site.label_atom_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteLabelCompId2

      public StrColumn getAtomSiteLabelCompId2()
      An optional identifier of the second of the three atom sites that define the angle. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteLabelSeqId2

      public IntColumn getAtomSiteLabelSeqId2()
      An optional identifier of the second of the three atom sites that define the angle. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
      Returns:
      IntColumn

    • getAtomSiteLabelAsymId2

      public StrColumn getAtomSiteLabelAsymId2()
      An optional identifier of the second of the three atom sites that define the angle. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteId3

      public StrColumn getAtomSiteId3()
      The identifier of the third of the three atom sites that define the angle. This data item is a pointer to _atom_site.id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteLabelAltId3

      public StrColumn getAtomSiteLabelAltId3()
      An optional identifier of the third of the three atom sites that define the angle. This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteLabelAtomId3

      public StrColumn getAtomSiteLabelAtomId3()
      An optional identifier of the third of the three atom sites that define the angle. This data item is a pointer to _atom_site.label_atom_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteLabelCompId3

      public StrColumn getAtomSiteLabelCompId3()
      An optional identifier of the third of the three atom sites that define the angle. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteLabelSeqId3

      public IntColumn getAtomSiteLabelSeqId3()
      An optional identifier of the third of the three atom sites that define the angle. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
      Returns:
      IntColumn

    • getAtomSiteLabelAsymId3

      public StrColumn getAtomSiteLabelAsymId3()
      An optional identifier of the third of the three atom sites that define the angle. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteAuthAsymId1

      public StrColumn getAtomSiteAuthAsymId1()
      An optional identifier of the first of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteAuthAtomId1

      public StrColumn getAtomSiteAuthAtomId1()
      An optional identifier of the first of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteAuthCompId1

      public StrColumn getAtomSiteAuthCompId1()
      An optional identifier of the first of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteAuthSeqId1

      public StrColumn getAtomSiteAuthSeqId1()
      An optional identifier of the first of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteAuthAtomId2

      public StrColumn getAtomSiteAuthAtomId2()
      An optional identifier of the second of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteAuthAsymId2

      public StrColumn getAtomSiteAuthAsymId2()
      An optional identifier of the second of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteAuthCompId2

      public StrColumn getAtomSiteAuthCompId2()
      An optional identifier of the second of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteAuthSeqId2

      public StrColumn getAtomSiteAuthSeqId2()
      An optional identifier of the second of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteAuthAtomId3

      public StrColumn getAtomSiteAuthAtomId3()
      An optional identifier of the third of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteAuthAsymId3

      public StrColumn getAtomSiteAuthAsymId3()
      An optional identifier of the third of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteAuthCompId3

      public StrColumn getAtomSiteAuthCompId3()
      An optional identifier of the third of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteAuthSeqId3

      public StrColumn getAtomSiteAuthSeqId3()
      An optional identifier of the third of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getPublFlag

      public StrColumn getPublFlag()
      This code signals whether the angle is referred to in a publication or should be placed in a table of significant angles.
      Returns:
      StrColumn

    • getSiteSymmetry1

      public StrColumn getSiteSymmetry1()
      The symmetry code of the first of the three atom sites that define the angle.
      Returns:
      StrColumn

    • getSiteSymmetry2

      public StrColumn getSiteSymmetry2()
      The symmetry code of the second of the three atom sites that define the angle.
      Returns:
      StrColumn

    • getSiteSymmetry3

      public StrColumn getSiteSymmetry3()
      The symmetry code of the third of the three atom sites that define the angle.
      Returns:
      StrColumn

    • getValue

      public FloatColumn getValue()
      Angle in degrees defined by the three sites _geom_angle.atom_site_id_1, _geom_angle.atom_site_id_2 and _geom_angle.atom_site_id_3.
      Returns:
      FloatColumn

    • getValueEsd

      public FloatColumn getValueEsd()
      The standard uncertainty (estimated standard deviation) of _geom_angle.value.
      Returns:
      FloatColumn

    • getPdbxAtomSitePDBInsCode1

      public StrColumn getPdbxAtomSitePDBInsCode1()
      Pointer to _atom_site.pdbx_PDB_ins_code.
      Returns:
      StrColumn

    • getPdbxAtomSitePDBInsCode2

      public StrColumn getPdbxAtomSitePDBInsCode2()
      Pointer to _atom_site.pdbx_PDB_ins_code.
      Returns:
      StrColumn

    • getPdbxAtomSitePDBInsCode3

      public StrColumn getPdbxAtomSitePDBInsCode3()
      Pointer to _atom_site.pdbx_PDB_ins_code.
      Returns:
      StrColumn

    • getPdbxPDBModelNum

      public IntColumn getPdbxPDBModelNum()
      Pointer to _atom_site.pdbx_PDB_model_num
      Returns:
      IntColumn