Package org.rcsb.cif.schema.mm

Class GeomBond

java.lang.Object
org.rcsb.cif.schema.DelegatingCategory
org.rcsb.cif.schema.mm.GeomBond
All Implemented Interfaces:
Category
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class GeomBond
extends DelegatingCategory
Data items in the GEOM_BOND category record details about the bond lengths as calculated from the contents of the ATOM, CELL and SYMMETRY data.

  • Constructor Details

  • Method Details

    • createDelegate

      protected Column createDelegate​(String columnName, Column column)
      Overrides:
      createDelegate in class DelegatingCategory

    • getAtomSiteId1

      public StrColumn getAtomSiteId1()
      The identifier of the first of the two atom sites that define the bond. This data item is a pointer to _atom_site.id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteLabelAltId1

      public StrColumn getAtomSiteLabelAltId1()
      An optional identifier of the first of the two atom sites that define the bond. This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteLabelAtomId1

      public StrColumn getAtomSiteLabelAtomId1()
      An optional identifier of the first of the two atom sites that define the bond. This data item is a pointer to _atom_site.label_atom_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteLabelCompId1

      public StrColumn getAtomSiteLabelCompId1()
      An optional identifier of the first of the two atom sites that define the bond. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteLabelSeqId1

      public IntColumn getAtomSiteLabelSeqId1()
      An optional identifier of the first of the two atom sites that define the bond. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
      Returns:
      IntColumn

    • getAtomSiteLabelAsymId1

      public StrColumn getAtomSiteLabelAsymId1()
      An optional identifier of the first of the two atom sites that define the bond. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteId2

      public StrColumn getAtomSiteId2()
      The identifier of the second of the two atom sites that define the bond. This data item is a pointer to _atom_site.id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteLabelAltId2

      public StrColumn getAtomSiteLabelAltId2()
      An optional identifier of the second of the two atom sites that define the bond. This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteLabelAtomId2

      public StrColumn getAtomSiteLabelAtomId2()
      An optional identifier of the second of the two atom sites that define the bond. This data item is a pointer to _atom_site.label_atom_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteLabelCompId2

      public StrColumn getAtomSiteLabelCompId2()
      An optional identifier of the second of the two atom sites that define the bond. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteLabelSeqId2

      public IntColumn getAtomSiteLabelSeqId2()
      An optional identifier of the second of the two atom sites that define the bond. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
      Returns:
      IntColumn

    • getAtomSiteLabelAsymId2

      public StrColumn getAtomSiteLabelAsymId2()
      An optional identifier of the second of the two atom sites that define the bond. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteAuthAtomId1

      public StrColumn getAtomSiteAuthAtomId1()
      An optional identifier of the first of the two atom sites that define the bond. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteAuthAsymId1

      public StrColumn getAtomSiteAuthAsymId1()
      An optional identifier of the first of the two atom sites that define the bond. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteAuthCompId1

      public StrColumn getAtomSiteAuthCompId1()
      An optional identifier of the first of the two atom sites that define the bond. This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteAuthSeqId1

      public StrColumn getAtomSiteAuthSeqId1()
      An optional identifier of the first of the two atom sites that define the bond. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteAuthAtomId2

      public StrColumn getAtomSiteAuthAtomId2()
      An optional identifier of the second of the two atom sites that define the bond. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteAuthAsymId2

      public StrColumn getAtomSiteAuthAsymId2()
      An optional identifier of the second of the two atom sites that define the bond. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteAuthCompId2

      public StrColumn getAtomSiteAuthCompId2()
      An optional identifier of the second of the two atom sites that define the bond. This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteAuthSeqId2

      public StrColumn getAtomSiteAuthSeqId2()
      An optional identifier of the second of the two atom sites that define the bond. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getDist

      public FloatColumn getDist()
      The intramolecular bond distance in angstroms.
      Returns:
      FloatColumn

    • getDistEsd

      public FloatColumn getDistEsd()
      The standard uncertainty (estimated standard deviation) of _geom_bond.dist.
      Returns:
      FloatColumn

    • getPublFlag

      public StrColumn getPublFlag()
      This code signals whether the bond distance is referred to in a publication or should be placed in a list of significant bond distances.
      Returns:
      StrColumn

    • getSiteSymmetry1

      public StrColumn getSiteSymmetry1()
      The symmetry code of the first of the two atom sites that define the bond.
      Returns:
      StrColumn

    • getSiteSymmetry2

      public StrColumn getSiteSymmetry2()
      The symmetry code of the second of the two atom sites that define the bond.
      Returns:
      StrColumn

    • getValence

      public IntColumn getValence()
      The bond valence calculated from _geom_bond.dist.
      Returns:
      IntColumn

    • getPdbxAtomSitePDBInsCode1

      public StrColumn getPdbxAtomSitePDBInsCode1()
      Pointer to _atom_site.pdbx_PDB_ins_code.
      Returns:
      StrColumn

    • getPdbxAtomSitePDBInsCode2

      public StrColumn getPdbxAtomSitePDBInsCode2()
      Pointer to _atom_site.pdbx_PDB_ins_code.
      Returns:
      StrColumn

    • getPdbxPDBModelNum

      public IntColumn getPdbxPDBModelNum()
      Pointer to _atom_site.pdbx_PDB_model_num
      Returns:
      IntColumn