Package org.rcsb.cif.schema.mm

Class GeomHbond

java.lang.Object
org.rcsb.cif.schema.DelegatingCategory
org.rcsb.cif.schema.mm.GeomHbond
All Implemented Interfaces:
Category
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class GeomHbond
extends DelegatingCategory
Data items in the GEOM_HBOND category record details about hydrogen bonds as calculated from the contents of the ATOM, CELL and SYMMETRY data.

  • Constructor Details

  • Method Details

    • createDelegate

      protected Column createDelegate​(String columnName, Column column)
      Overrides:
      createDelegate in class DelegatingCategory

    • getAngleDHA

      public FloatColumn getAngleDHA()
      The angle in degrees defined by the donor-, hydrogen- and acceptor-atom sites in a hydrogen bond.
      Returns:
      FloatColumn

    • getAngleDHAEsd

      public FloatColumn getAngleDHAEsd()
      The standard uncertainty (estimated standard deviation) of _geom_hbond.angle_DHA.
      Returns:
      FloatColumn

    • getAtomSiteIdA

      public StrColumn getAtomSiteIdA()
      The identifier of the acceptor-atom site that defines the hydrogen bond. This data item is a pointer to _atom_site.id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteLabelAltIdA

      public StrColumn getAtomSiteLabelAltIdA()
      An optional identifier of the acceptor-atom site that defines the hydrogen bond. This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteLabelAsymIdA

      public StrColumn getAtomSiteLabelAsymIdA()
      An optional identifier of the acceptor-atom site that defines the hydrogen bond. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteLabelAtomIdA

      public StrColumn getAtomSiteLabelAtomIdA()
      An optional identifier of the acceptor-atom site that defines the hydrogen bond. This data item is a pointer to _atom_site.label_atom_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteLabelCompIdA

      public StrColumn getAtomSiteLabelCompIdA()
      An optional identifier of the acceptor-atom site that defines the hydrogen bond. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteLabelSeqIdA

      public IntColumn getAtomSiteLabelSeqIdA()
      An optional identifier of the acceptor-atom site that defines the hydrogen bond. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
      Returns:
      IntColumn

    • getAtomSiteIdD

      public StrColumn getAtomSiteIdD()
      The identifier of the donor-atom site that defines the hydrogen bond. This data item is a pointer to _atom_site.id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteLabelAltIdD

      public StrColumn getAtomSiteLabelAltIdD()
      An optional identifier of the donor-atom site that defines the hydrogen bond. This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteLabelAsymIdD

      public StrColumn getAtomSiteLabelAsymIdD()
      An optional identifier of the donor-atom site that defines the hydrogen bond. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteLabelAtomIdD

      public StrColumn getAtomSiteLabelAtomIdD()
      An optional identifier of the donor-atom site that defines the hydrogen bond. This data item is a pointer to _atom_site.label_atom_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteLabelCompIdD

      public StrColumn getAtomSiteLabelCompIdD()
      An optional identifier of the donor-atom site that defines the hydrogen bond. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteLabelSeqIdD

      public IntColumn getAtomSiteLabelSeqIdD()
      An optional identifier of the donor-atom site that defines the hydrogen bond. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
      Returns:
      IntColumn

    • getAtomSiteIdH

      public StrColumn getAtomSiteIdH()
      The identifier of the hydrogen-atom site that defines the hydrogen bond. This data item is a pointer to _atom_site.id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteLabelAltIdH

      public StrColumn getAtomSiteLabelAltIdH()
      An optional identifier of the hydrogen-atom site that defines the hydrogen bond. This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteLabelAsymIdH

      public StrColumn getAtomSiteLabelAsymIdH()
      An optional identifier of the hydrogen-atom site that defines the hydrogen bond. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteLabelAtomIdH

      public StrColumn getAtomSiteLabelAtomIdH()
      An optional identifier of the hydrogen-atom site that defines the hydrogen bond. This data item is a pointer to _atom_site.label_atom_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteLabelCompIdH

      public StrColumn getAtomSiteLabelCompIdH()
      An optional identifier of the hydrogen-atom site that defines the hydrogen bond. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteLabelSeqIdH

      public IntColumn getAtomSiteLabelSeqIdH()
      An optional identifier of the hydrogen-atom site that defines the hydrogen bond. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
      Returns:
      IntColumn

    • getAtomSiteAuthAsymIdA

      public StrColumn getAtomSiteAuthAsymIdA()
      An optional identifier of the acceptor-atom site that defines the hydrogen bond. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteAuthAtomIdA

      public StrColumn getAtomSiteAuthAtomIdA()
      An optional identifier of the acceptor-atom site that defines the hydrogen bond. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteAuthCompIdA

      public StrColumn getAtomSiteAuthCompIdA()
      An optional identifier of the acceptor-atom site that defines the hydrogen bond. This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteAuthSeqIdA

      public StrColumn getAtomSiteAuthSeqIdA()
      An optional identifier of the acceptor-atom site that defines the hydrogen bond. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteAuthAsymIdD

      public StrColumn getAtomSiteAuthAsymIdD()
      An optional identifier of the donor-atom site that defines the hydrogen bond. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteAuthAtomIdD

      public StrColumn getAtomSiteAuthAtomIdD()
      An optional identifier of the donor-atom site that defines the hydrogen bond. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteAuthCompIdD

      public StrColumn getAtomSiteAuthCompIdD()
      An optional identifier of the donor-atom site that defines the hydrogen bond. This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteAuthSeqIdD

      public StrColumn getAtomSiteAuthSeqIdD()
      An optional identifier of the donor-atom site that defines the hydrogen bond. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteAuthAsymIdH

      public StrColumn getAtomSiteAuthAsymIdH()
      An optional identifier of the hydrogen-atom site that defines the hydrogen bond. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteAuthAtomIdH

      public StrColumn getAtomSiteAuthAtomIdH()
      An optional identifier of the hydrogen-atom site that defines the hydrogen bond. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteAuthCompIdH

      public StrColumn getAtomSiteAuthCompIdH()
      An optional identifier of the hydrogen-atom site that defines the hydrogen bond. This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteAuthSeqIdH

      public StrColumn getAtomSiteAuthSeqIdH()
      An optional identifier of the hydrogen-atom site that defines the hydrogen bond. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getDistDA

      public FloatColumn getDistDA()
      The distance in angstroms between the donor- and acceptor-atom sites in a hydrogen bond.
      Returns:
      FloatColumn

    • getDistDAEsd

      public FloatColumn getDistDAEsd()
      The standard uncertainty (estimated standard deviation) in angstroms of _geom_hbond.dist_DA.
      Returns:
      FloatColumn

    • getDistDH

      public FloatColumn getDistDH()
      The distance in angstroms between the donor- and hydrogen-atom sites in a hydrogen bond.
      Returns:
      FloatColumn

    • getDistDHEsd

      public FloatColumn getDistDHEsd()
      The standard uncertainty (estimated standard deviation) in angstroms of _geom_hbond.dist_DH.
      Returns:
      FloatColumn

    • getDistHA

      public FloatColumn getDistHA()
      The distance in angstroms between the hydrogen- and acceptor- atom sites in a hydrogen bond.
      Returns:
      FloatColumn

    • getDistHAEsd

      public FloatColumn getDistHAEsd()
      The standard uncertainty (estimated standard deviation) in angstroms of _geom_hbond.dist_HA.
      Returns:
      FloatColumn

    • getPublFlag

      public StrColumn getPublFlag()
      This code signals whether the hydrogen-bond information is referred to in a publication or should be placed in a table of significant hydrogen-bond geometry.
      Returns:
      StrColumn

    • getSiteSymmetryA

      public StrColumn getSiteSymmetryA()
      The symmetry code of the acceptor-atom site that defines the hydrogen bond.
      Returns:
      StrColumn

    • getSiteSymmetryD

      public StrColumn getSiteSymmetryD()
      The symmetry code of the donor-atom site that defines the hydrogen bond.
      Returns:
      StrColumn

    • getSiteSymmetryH

      public StrColumn getSiteSymmetryH()
      The symmetry code of the hydrogen-atom site that defines the hydrogen bond.
      Returns:
      StrColumn