Package org.rcsb.cif.schema.mm

Class Ihm2demClassAverageFitting

java.lang.Object
org.rcsb.cif.schema.DelegatingCategory
org.rcsb.cif.schema.mm.Ihm2demClassAverageFitting
All Implemented Interfaces:
Category
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class Ihm2demClassAverageFitting
extends DelegatingCategory
Data items in the IHM_2DEM_CLASS_AVERAGE_FITTING category records the details of the fitting of the model to the 2DEM class averages used in the IHM modeling. The following conventions are recommended while generating the rotation matrix and translation vector for transformation. - The model is rotated and translated to fit to the 2DEM image. - The 2DEM image should be in the XY plane. - The lower left image corner (image pixel index 0,0) should be at x,y,z = (0,0,0). - The 2D image is scaled by the _ihm_2dem_class_average_restraint.pixel_size_width and _ihm_2dem_class_average_restraint.pixel_size_height from the IHM_2DEM_CLASS_AVERAGE_RESTRAINT table. - The transformation is applied after the scaling and hence the translation vector should account for the scaling. - There are no specifications for Z translations i.e., how far the image should be from the model while projecting. It may be set to zero.

  • Constructor Details

  • Method Details

    • createDelegate

      protected Column createDelegate​(String columnName, Column column)
      Overrides:
      createDelegate in class DelegatingCategory

    • getId

      public IntColumn getId()
      A unique identifier for the 2dem class average fitting data.
      Returns:
      IntColumn

    • getRestraintId

      public IntColumn getRestraintId()
      Identifier to the 2dem class average restraint. This data item is a pointer to the _ihm_2dem_class_average_restraint.id in the IHM_2DEM_CLASS_AVERAGE_RESTRAINT category.
      Returns:
      IntColumn

    • getModelId

      public IntColumn getModelId()
      The model number corresponding to the 2DEM fitting result presented. This data item is a pointer to _ihm_model_list.model_id in the IHM_MODEL_LIST category.
      Returns:
      IntColumn

    • getCrossCorrelationCoefficient

      public FloatColumn getCrossCorrelationCoefficient()
      The cross correlation coefficient corresponding to the model to image fitting.
      Returns:
      FloatColumn

    • getRotMatrix11

      public FloatColumn getRotMatrix11()
      Data item of the rotation matrix used in the fitting of the model to the image.
      Returns:
      FloatColumn

    • getRotMatrix21

      public FloatColumn getRotMatrix21()
      Data item of the rotation matrix used in the fitting of the model to the image.
      Returns:
      FloatColumn

    • getRotMatrix31

      public FloatColumn getRotMatrix31()
      Data item of the rotation matrix used in the fitting of the model to the image.
      Returns:
      FloatColumn

    • getRotMatrix12

      public FloatColumn getRotMatrix12()
      Data item of the rotation matrix used in the fitting of the model to the image.
      Returns:
      FloatColumn

    • getRotMatrix22

      public FloatColumn getRotMatrix22()
      Data item of the rotation matrix used in the fitting of the model to the image.
      Returns:
      FloatColumn

    • getRotMatrix32

      public FloatColumn getRotMatrix32()
      Data item of the rotation matrix used in the fitting of the model to the image.
      Returns:
      FloatColumn

    • getRotMatrix13

      public FloatColumn getRotMatrix13()
      Data item of the rotation matrix used in the fitting of the model to the image.
      Returns:
      FloatColumn

    • getRotMatrix23

      public FloatColumn getRotMatrix23()
      Data item of the rotation matrix used in the fitting of the model to the image.
      Returns:
      FloatColumn

    • getRotMatrix33

      public FloatColumn getRotMatrix33()
      Data item of the rotation matrix used in the fitting of the model to the image.
      Returns:
      FloatColumn

    • getTrVector1

      public FloatColumn getTrVector1()
      Data item of the tranlation vector used in the fitting of the model to the image.
      Returns:
      FloatColumn

    • getTrVector2

      public FloatColumn getTrVector2()
      Data item of the tranlation vector used in the fitting of the model to the image.
      Returns:
      FloatColumn

    • getTrVector3

      public FloatColumn getTrVector3()
      Data item of the tranlation vector used in the fitting of the model to the image.
      Returns:
      FloatColumn