Package org.rcsb.cif.schema.mm

Class IhmHydroxylRadicalFpRestraint

java.lang.Object
org.rcsb.cif.schema.DelegatingCategory
org.rcsb.cif.schema.mm.IhmHydroxylRadicalFpRestraint
All Implemented Interfaces:
Category
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class IhmHydroxylRadicalFpRestraint
extends DelegatingCategory
Data items in the IHM_HYDROXYL_RADICAL_FP_RESTRAINT category records the restraints derived from hydroxyl radical footprinting experiment. These restraints provide information regarding solvent accessible surface area of residues.

  • Constructor Details

  • Method Details

    • createDelegate

      protected Column createDelegate​(String columnName, Column column)
      Overrides:
      createDelegate in class DelegatingCategory

    • getId

      public IntColumn getId()
      A unique identifier for the hydroxyl radical footprinting restraint.
      Returns:
      IntColumn

    • getGroupId

      public IntColumn getGroupId()
      An identifier to group the hydroxyl radical footprinting restraints.
      Returns:
      IntColumn

    • getEntityDescription

      public StrColumn getEntityDescription()
      A text description of the molecular entity.
      Returns:
      StrColumn

    • getEntityId

      public StrColumn getEntityId()
      The entity identifier. This data item is a pointer to _entity_poly_seq.entity_id in the ENTITY_POLY_SEQ category.
      Returns:
      StrColumn

    • getAsymId

      public StrColumn getAsymId()
      An asym/strand identifier. This data item is a pointer to _struct_asym.id in the STRUCT_ASYM category.
      Returns:
      StrColumn

    • getCompId

      public StrColumn getCompId()
      The component identifier for the residue. This data item is a pointer to _entity_poly_seq.mon_id in the ENTITY_POLY_SEQ category.
      Returns:
      StrColumn

    • getSeqId

      public IntColumn getSeqId()
      The sequence index for the residue. This data item is a pointer to _entity_poly_seq.num in the ENTITY_POLY_SEQ category.
      Returns:
      IntColumn

    • getFpRate

      public FloatColumn getFpRate()
      The footprinting rate.
      Returns:
      FloatColumn

    • getFpRateError

      public FloatColumn getFpRateError()
      The footprinting rate error.
      Returns:
      FloatColumn

    • getLogPf

      public FloatColumn getLogPf()
      Log (base 10) protection factor.
      Returns:
      FloatColumn

    • getLogPfError

      public FloatColumn getLogPfError()
      Error of Log (base 10) protection factor.
      Returns:
      FloatColumn

    • getPredictedSasa

      public FloatColumn getPredictedSasa()
      The predicted solvent accessible surface area.
      Returns:
      FloatColumn

    • getDatasetListId

      public IntColumn getDatasetListId()
      Identifier to the hydroxyl radical footprinting dataset. This data item is a pointer to the _ihm_dataset_list.id in the IHM_DATASET_LIST category.
      Returns:
      IntColumn

    • getSoftwareId

      public IntColumn getSoftwareId()
      Identifier to the software used to obtain the restraint. This data item is a pointer to the _software.pdbx_ordinal in the SOFTWARE category.
      Returns:
      IntColumn