Package org.rcsb.cif.schema.mm

Class IhmModelingProtocolDetails

java.lang.Object
org.rcsb.cif.schema.DelegatingCategory
org.rcsb.cif.schema.mm.IhmModelingProtocolDetails
All Implemented Interfaces:
Category
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class IhmModelingProtocolDetails
extends DelegatingCategory
Data items in the IHM_MODELING_PROTOCOL_DETAILS category records the step-wise details of the integrative modeling workflow.

  • Constructor Details

  • Method Details

    • createDelegate

      protected Column createDelegate​(String columnName, Column column)
      Overrides:
      createDelegate in class DelegatingCategory

    • getId

      public IntColumn getId()
      A unique identifier for the modeling protocol/step combination.
      Returns:
      IntColumn

    • getProtocolId

      public IntColumn getProtocolId()
      An index for the modeling protocol carried out. This data item is a pointer to _ihm_modeling_protocol.id in the IHM_MODELING_PROTOCOL category.
      Returns:
      IntColumn

    • getStepId

      public IntColumn getStepId()
      An index for a particular step within the modeling protocol.
      Returns:
      IntColumn

    • getStructAssemblyId

      public IntColumn getStructAssemblyId()
      An index for the structural assembly being modeled. This is an indicator to whether the whole assembly is modeled or if only a subset of the structural assembly is modeled. This data item is a pointer to _ihm_struct_assembly.id in the IHM_STRUCT_ASSEMBLY category. The IHM_STRUCT_ASSEMBLY category provides the details regarding the different structural assemblies used in the modeling. The default value for this data item is "1", indicating that the entire assembly is being modeled.
      Returns:
      IntColumn

    • getDatasetGroupId

      public IntColumn getDatasetGroupId()
      An index for the dataset group being used in the modeling protocol. This data item is a pointer to the _ihm_dataset_group.id in the IHM_DATASET_GROUP category.
      Returns:
      IntColumn

    • getStructAssemblyDescription

      public StrColumn getStructAssemblyDescription()
      A textual description of the structural assembly being modeled.
      Returns:
      StrColumn

    • getStepName

      public StrColumn getStepName()
      The name or type of the modeling step.
      Returns:
      StrColumn

    • getStepMethod

      public StrColumn getStepMethod()
      Description of the method involved in the modeling step.
      Returns:
      StrColumn

    • getNumModelsBegin

      public IntColumn getNumModelsBegin()
      The number of models in the beginning of the step.
      Returns:
      IntColumn

    • getNumModelsEnd

      public IntColumn getNumModelsEnd()
      The number of models at the end of the step.
      Returns:
      IntColumn

    • getMultiScaleFlag

      public StrColumn getMultiScaleFlag()
      A flag to indicate if the modeling is multi scale.
      Returns:
      StrColumn

    • getMultiStateFlag

      public StrColumn getMultiStateFlag()
      A flag to indicate if the modeling is multi state.
      Returns:
      StrColumn

    • getOrderedFlag

      public StrColumn getOrderedFlag()
      A flag to indicate if the modeling involves an ensemble ordered by time or other order.
      Returns:
      StrColumn

    • getEnsembleFlag

      public StrColumn getEnsembleFlag()
      A flag to indicate if the modeling involves an ensemble.
      Returns:
      StrColumn

    • getScriptFileId

      public IntColumn getScriptFileId()
      The file id corresponding to the script used in the modeling protocol step. This data item is a pointer to _ihm_external_files.id in the IHM_EXTERNAL_FILES category.
      Returns:
      IntColumn

    • getSoftwareId

      public IntColumn getSoftwareId()
      Identifier to the software used in the modeling protocol step. This data item is a pointer to the _software.pdbx_ordinal in the SOFTWARE category.
      Returns:
      IntColumn

    • getDescription

      public StrColumn getDescription()
      Textual description of the protocol step.
      Returns:
      StrColumn