Package org.rcsb.cif.schema.mm

Class IhmStartingComparativeModels

java.lang.Object
org.rcsb.cif.schema.DelegatingCategory
org.rcsb.cif.schema.mm.IhmStartingComparativeModels
All Implemented Interfaces:
Category
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class IhmStartingComparativeModels
extends DelegatingCategory
Data items in the IHM_STARTING_COMPARATIVE_MODELS category records additional details about comparative models used as starting inputs in the integrative model building process.

  • Constructor Details

  • Method Details

    • createDelegate

      protected Column createDelegate​(String columnName, Column column)
      Overrides:
      createDelegate in class DelegatingCategory

    • getId

      public IntColumn getId()
      A unique identifier for the starting comparative model.
      Returns:
      IntColumn

    • getStartingModelId

      public StrColumn getStartingModelId()
      The identifier for the starting structural model. This data item is a pointer to _ihm_starting_model_details.starting_model_id in the IHM_STARTING_MODEL_DETAILS category.
      Returns:
      StrColumn

    • getStartingModelAuthAsymId

      public StrColumn getStartingModelAuthAsymId()
      The chainId/auth_asym_id corresponding to the starting model.
      Returns:
      StrColumn

    • getStartingModelSeqIdBegin

      public IntColumn getStartingModelSeqIdBegin()
      The starting residue index of the starting model.
      Returns:
      IntColumn

    • getStartingModelSeqIdEnd

      public IntColumn getStartingModelSeqIdEnd()
      The ending residue index of the starting model.
      Returns:
      IntColumn

    • getTemplateAuthAsymId

      public StrColumn getTemplateAuthAsymId()
      The chainId/auth_asym_id corresponding to the template.
      Returns:
      StrColumn

    • getTemplateSeqIdBegin

      public IntColumn getTemplateSeqIdBegin()
      The starting residue index of the template.
      Returns:
      IntColumn

    • getTemplateSeqIdEnd

      public IntColumn getTemplateSeqIdEnd()
      The ending residue index of the template.
      Returns:
      IntColumn

    • getTemplateSequenceIdentity

      public FloatColumn getTemplateSequenceIdentity()
      The percentage sequence identity between the template sequence and the comparative model sequence.
      Returns:
      FloatColumn

    • getTemplateSequenceIdentityDenominator

      public StrColumn getTemplateSequenceIdentityDenominator()
      The denominator used while calculating the sequence identity provided in _ihm_starting_comparative_models.template_sequence_identity.
      Returns:
      StrColumn

    • getTemplateDatasetListId

      public IntColumn getTemplateDatasetListId()
      The dataset list id corresponding to the template used to obtain the comparative model. This data item is a pointer to _ihm_dataset_list.id in the IHM_DATASET_LIST category.
      Returns:
      IntColumn

    • getAlignmentFileId

      public IntColumn getAlignmentFileId()
      The file id corresponding to the sequence alignment of the template sequence and the comparative model sequence. This data item is a pointer to _ihm_external_files.id in the IHM_EXTERNAL_FILES category.
      Returns:
      IntColumn

    • getDetails

      public StrColumn getDetails()
      Additional details regarding the starting comparative models.
      Returns:
      StrColumn