Package org.rcsb.cif.schema.mm

Class IhmStartingModelCoord

java.lang.Object
org.rcsb.cif.schema.DelegatingCategory
org.rcsb.cif.schema.mm.IhmStartingModelCoord
All Implemented Interfaces:
Category
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class IhmStartingModelCoord
extends DelegatingCategory
Data items in the IHM_STARTING_MODEL_COORD category records the coordinates for structural templates used as starting inputs in the integrative model building tasks.

  • Constructor Details

  • Method Details

    • createDelegate

      protected Column createDelegate​(String columnName, Column column)
      Overrides:
      createDelegate in class DelegatingCategory

    • getOrdinalId

      public IntColumn getOrdinalId()
      A unique identifier for this coordinate position.
      Returns:
      IntColumn

    • getStartingModelId

      public StrColumn getStartingModelId()
      The identifier for the starting structural model. This data item is a pointer to _ihm_starting_model_details.starting_model_id in the IHM_STARTING_MODEL_DETAILS category.
      Returns:
      StrColumn

    • getGroupPDB

      public StrColumn getGroupPDB()
      The group of atoms to which the atom site in the starting model belongs. This data item is provided for compatibility with the original Protein Data Bank format, and only for that purpose.
      Returns:
      StrColumn

    • getId

      public IntColumn getId()
      The serial number for this coordinate position.
      Returns:
      IntColumn

    • getTypeSymbol

      public StrColumn getTypeSymbol()
      The atom type symbol(element symbol) corresponding to this coordinate position.
      Returns:
      StrColumn

    • getEntityId

      public StrColumn getEntityId()
      The entity identifier corresponding to this coordinate position. This data item is a pointer to _entity.id in the ENTITY category.
      Returns:
      StrColumn

    • getAtomId

      public StrColumn getAtomId()
      The atom identifier/name corresponding to this coordinate position. This data item is a pointer to _chem_comp_atom.atom_id in the CHEM_COMP_ATOM category.
      Returns:
      StrColumn

    • getCompId

      public StrColumn getCompId()
      The component identifier corresponding to this coordinate position. This data item is a pointer to _chem_comp.id in the CHEM_COMP category.
      Returns:
      StrColumn

    • getSeqId

      public IntColumn getSeqId()
      The sequence index corresponding this to coordinate position. This data item is a pointer to _entity_poly_seq.num in the ENTITY_POLY_SEQ category.
      Returns:
      IntColumn

    • getAsymId

      public StrColumn getAsymId()
      The asym/strand id corresponding to this coordinate position. This data item is a pointer to _struct_asym.id in the STRUCT_ASYM category.
      Returns:
      StrColumn

    • getCartnX

      public FloatColumn getCartnX()
      The Cartesian X component corresponding to this coordinate position.
      Returns:
      FloatColumn

    • getCartnY

      public FloatColumn getCartnY()
      The Cartesian Y component corresponding to this coordinate position.
      Returns:
      FloatColumn

    • getCartnZ

      public FloatColumn getCartnZ()
      The Cartesian Z component corresponding to this coordinate position.
      Returns:
      FloatColumn

    • getBIsoOrEquiv

      public FloatColumn getBIsoOrEquiv()
      The isotropic temperature factor corresponding to this coordinate position.
      Returns:
      FloatColumn

    • getFormalCharge

      public IntColumn getFormalCharge()
      The formal charge corresponding to this coordinate position.
      Returns:
      IntColumn