Package org.rcsb.cif.schema.mm

Class IhmStartingModelSeqDif

java.lang.Object
org.rcsb.cif.schema.DelegatingCategory
org.rcsb.cif.schema.mm.IhmStartingModelSeqDif
All Implemented Interfaces:
Category
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class IhmStartingModelSeqDif
extends DelegatingCategory
Data items in the IHM_STARTING_MODEL_SEQ_DIF category provide a mechanism for indicating and annotating point differences between the sequence of the entity or biological unit described in the data block and the sequence of the starting model used in the integrative modeling referenced from a database. The point differences may be due to point mutations introduced in the starting model or the presence of modified amino acid residues.

  • Constructor Details

  • Method Details

    • createDelegate

      protected Column createDelegate​(String columnName, Column column)
      Overrides:
      createDelegate in class DelegatingCategory

    • getId

      public IntColumn getId()
      A unique identifier for the entry.
      Returns:
      IntColumn

    • getEntityId

      public StrColumn getEntityId()
      A unique identifier for the distinct molecular entities. This data item is a pointer to _entity_poly_seq.entity_id in the ENTITY_POLY category.
      Returns:
      StrColumn

    • getAsymId

      public StrColumn getAsymId()
      An asym/strand identifier for the entity molecule. This data item is a pointer to _struct_asym.id in the STRUCT_ASYM category.
      Returns:
      StrColumn

    • getSeqId

      public IntColumn getSeqId()
      The residue index. This data item is a pointer to _entity_poly_seq.num in the ENTITY_POLY_SEQ category.
      Returns:
      IntColumn

    • getCompId

      public StrColumn getCompId()
      The component identifier for the residue. This data item is a pointer to _entity_poly_seq.mon_id in the ENTITY_POLY_SEQ category.
      Returns:
      StrColumn

    • getStartingModelId

      public StrColumn getStartingModelId()
      Unique identifier for the starting model record. This data item is a pointer to _ihm_starting_model_details.starting_model_id in the IHM_STARTING_MODEL_DETAILS category.
      Returns:
      StrColumn

    • getDbEntityId

      public StrColumn getDbEntityId()
      The molecular entity of the database starting model.
      Returns:
      StrColumn

    • getDbAsymId

      public StrColumn getDbAsymId()
      The asym/strand identifier for the entity molecule of the database starting model.
      Returns:
      StrColumn

    • getDbSeqId

      public IntColumn getDbSeqId()
      The corresponding residue index of the database starting model.
      Returns:
      IntColumn

    • getDbCompId

      public StrColumn getDbCompId()
      The correspinding component identifier for the residue in the database starting model.
      Returns:
      StrColumn

    • getDetails

      public StrColumn getDetails()
      A description of special aspects of the point differences between the sequence of the entity or biological unit described in the data block and that in the starting model referenced from a database.
      Returns:
      StrColumn