Package org.rcsb.cif.schema.mm

Class NdbStructNaBasePairStep

java.lang.Object
org.rcsb.cif.schema.DelegatingCategory
org.rcsb.cif.schema.mm.NdbStructNaBasePairStep
All Implemented Interfaces:
Category
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class NdbStructNaBasePairStep
extends DelegatingCategory
Data items in the NDB_STRUCT_NA_BASE_PAIR_STEP category record details of base pair step interactions.

  • Constructor Details

  • Method Details

    • createDelegate

      protected Column createDelegate​(String columnName, Column column)
      Overrides:
      createDelegate in class DelegatingCategory

    • getModelNumber

      public IntColumn getModelNumber()
      Describes the model number of the the base pair step. This data item is a pointer to _atom_site.pdbx_PDB_model_num in the ATOM_SITE category.
      Returns:
      IntColumn

    • getStepNumber

      public IntColumn getStepNumber()
      The sequence number of this step in the step sequence.
      Returns:
      IntColumn

    • getStepName

      public StrColumn getStepName()
      The text name of this step.
      Returns:
      StrColumn

    • getILabelAsymId1

      public StrColumn getILabelAsymId1()
      Describes the asym id of the i-th base in the first base pair of the step. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getILabelCompId1

      public StrColumn getILabelCompId1()
      Describes the component id of the i-th base in the first base pair of the step. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getILabelSeqId1

      public IntColumn getILabelSeqId1()
      Describes the sequence number of the i-th base in the first base pair of the step. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
      Returns:
      IntColumn

    • getISymmetry1

      public StrColumn getISymmetry1()
      Describes the symmetry operation that should be applied to the coordinates of the i-th base to generate the first partner in the first base pair of the step.
      Returns:
      StrColumn

    • getJLabelAsymId1

      public StrColumn getJLabelAsymId1()
      Describes the asym id of the j-th base in the first base pair of the step. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getJLabelCompId1

      public StrColumn getJLabelCompId1()
      Describes the component id of the j-th base in the first base pair of the step. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getJLabelSeqId1

      public IntColumn getJLabelSeqId1()
      Describes the sequence number of the j-th base in the first base pair of the step. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
      Returns:
      IntColumn

    • getJSymmetry1

      public StrColumn getJSymmetry1()
      Describes the symmetry operation that should be applied to the coordinates of the j-th base to generate the second partner in the first base pair of the step.
      Returns:
      StrColumn

    • getILabelAsymId2

      public StrColumn getILabelAsymId2()
      Describes the asym id of the i-th base in the second base pair of the step. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getILabelCompId2

      public StrColumn getILabelCompId2()
      Describes the component id of the i-th base in the second base pair of the step. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getILabelSeqId2

      public IntColumn getILabelSeqId2()
      Describes the sequence number of the i-th base in the second base pair of the step. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
      Returns:
      IntColumn

    • getISymmetry2

      public StrColumn getISymmetry2()
      Describes the symmetry operation that should be applied to the coordinates of the i-th base to generate the first partner in the second base pair of the step.
      Returns:
      StrColumn

    • getJLabelAsymId2

      public StrColumn getJLabelAsymId2()
      Describes the asym id of the j-th base in the second base pair of the step. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getJLabelCompId2

      public StrColumn getJLabelCompId2()
      Describes the component id of the j-th base in the second base pair of the step. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getJLabelSeqId2

      public IntColumn getJLabelSeqId2()
      Describes the sequence number of the j-th base in the second base pair of the step. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
      Returns:
      IntColumn

    • getJSymmetry2

      public StrColumn getJSymmetry2()
      Describes the symmetry operation that should be applied to the coordinates of the j-th base to generate the second partner in the second base pair of the step.
      Returns:
      StrColumn

    • getIAuthAsymId1

      public StrColumn getIAuthAsymId1()
      Describes the author's asym id of the i-th base in the first base pair of the step. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getIAuthSeqId1

      public StrColumn getIAuthSeqId1()
      Describes the author's sequence number of the i-th base in the first base pair of the step. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getIPDBInsCode1

      public StrColumn getIPDBInsCode1()
      Describes the PDB insertion code of the i-th base in the first base pair of the step. This data item is a pointer to _atom_site.pdbx_PDB_ins_code in the ATOM_SITE category.
      Returns:
      StrColumn

    • getJAuthAsymId1

      public StrColumn getJAuthAsymId1()
      Describes the author's asym id of the j-th base in the first base pair of the step. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getJAuthSeqId1

      public StrColumn getJAuthSeqId1()
      Describes the author's sequence number of the j-th base in the first base pair of the step. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getJPDBInsCode1

      public StrColumn getJPDBInsCode1()
      Describes the PDB insertion code of the j-th base in the first base pair of the step. This data item is a pointer to _atom_site.pdbx_PDB_ins_code in the ATOM_SITE category.
      Returns:
      StrColumn

    • getIAuthAsymId2

      public StrColumn getIAuthAsymId2()
      Describes the author's asym id of the i-th base in the second base pair of the step. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getIAuthSeqId2

      public StrColumn getIAuthSeqId2()
      Describes the author's sequence number of the i-th base in the second base pair of the step. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getIPDBInsCode2

      public StrColumn getIPDBInsCode2()
      Describes the PDB insertion code of the i-th base in the second base pair of the step. This data item is a pointer to _atom_site.pdbx_PDB_ins_code in the ATOM_SITE category.
      Returns:
      StrColumn

    • getJAuthAsymId2

      public StrColumn getJAuthAsymId2()
      Describes the author's asym id of the j-th base in the second base pair of the step. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getJAuthSeqId2

      public StrColumn getJAuthSeqId2()
      Describes the author's sequence number of the j-th base in the second base pair of the step. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getJPDBInsCode2

      public StrColumn getJPDBInsCode2()
      Describes the PDB insertion code of the j-th base in the second base pair of the step. This data item is a pointer to _atom_site.pdbx_PDB_ins_code in the ATOM_SITE category.
      Returns:
      StrColumn

    • getShift

      public FloatColumn getShift()
      The value of the base pair step shift parameter.
      Returns:
      FloatColumn

    • getSlide

      public FloatColumn getSlide()
      The value of the base pair step slide parameter.
      Returns:
      FloatColumn

    • getRise

      public FloatColumn getRise()
      The value of the base pair step rise parameter.
      Returns:
      FloatColumn

    • getTilt

      public FloatColumn getTilt()
      The value of the base pair step tilt parameter.
      Returns:
      FloatColumn

    • getRoll

      public FloatColumn getRoll()
      The value of the base pair step roll parameter.
      Returns:
      FloatColumn

    • getTwist

      public FloatColumn getTwist()
      The value of the base pair step twist parameter.
      Returns:
      FloatColumn

    • getXDisplacement

      public FloatColumn getXDisplacement()
      The value of the base pair step X displacement parameter.
      Returns:
      FloatColumn

    • getYDisplacement

      public FloatColumn getYDisplacement()
      The value of the base pair step Y displacement parameter.
      Returns:
      FloatColumn

    • getHelicalRise

      public FloatColumn getHelicalRise()
      The value of the base pair step helical rise parameter.
      Returns:
      FloatColumn

    • getInclination

      public FloatColumn getInclination()
      The value of the base pair step inclination parameter.
      Returns:
      FloatColumn

    • getTip

      public FloatColumn getTip()
      The value of the base pair step twist parameter.
      Returns:
      FloatColumn

    • getHelicalTwist

      public FloatColumn getHelicalTwist()
      The value of the base pair step helical twist parameter.
      Returns:
      FloatColumn