Package org.rcsb.cif.schema.mm

Class PdbxChemCompInstanceDepositorInfo

java.lang.Object
org.rcsb.cif.schema.DelegatingCategory
org.rcsb.cif.schema.mm.PdbxChemCompInstanceDepositorInfo
All Implemented Interfaces:
Category
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class PdbxChemCompInstanceDepositorInfo
extends DelegatingCategory
Data items in the PDBX_CHEM_COMP_INSTANCE_DEPOSITOR_INFO category records depositor provided information about the chemical context of component instances.

  • Constructor Details

  • Method Details

    • createDelegate

      protected Column createDelegate​(String columnName, Column column)
      Overrides:
      createDelegate in class DelegatingCategory

    • getOrdinal

      public IntColumn getOrdinal()
      The value of pdbx_chem_comp_instance_depositor_info.ordinal must uniquely identify a record in the PDBX_CHEM_COMP_INSTANCE_DEPOSITOR_INFO list.
      Returns:
      IntColumn

    • getLabelAltId

      public StrColumn getLabelAltId()
      An element of the chemical component instance identifier. This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getCompId

      public StrColumn getCompId()
      An element of the chemical component instance identifier. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getPDBInsCode

      public StrColumn getPDBInsCode()
      Optional element of the chemical component instance identifier. This data item is a pointer to _atom_site.pdbx_PDB_ins_code in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAuthAsymId

      public StrColumn getAuthAsymId()
      An element of the chemical component instance identifier. This data item corresponds to _atom_site.auth_asym_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAuthSeqId

      public StrColumn getAuthSeqId()
      An element of the chemical component instance identifier. This data item corresponds to _atom_site.auth_seq_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getInPolymerFlag

      public StrColumn getInPolymerFlag()
      A flag to indicate if the chemical component instance is a part of a polymer molecule.
      Returns:
      StrColumn

    • getAuthorProvidedFlag

      public StrColumn getAuthorProvidedFlag()
      A flag to indicate if details about this chemical component instance have been provided by the depositor.
      Returns:
      StrColumn

    • getFormula

      public StrColumn getFormula()
      The observed formula for the chemical component in the deposited coordinates. Formulae are written according to the following rules: (1) Only recognized element symbols may be used. (2) Each element symbol is followed by a 'count' number. A count of '1' may be omitted. (3) A space or parenthesis must separate each cluster of (element symbol + count), but in general parentheses are not used. (4) The order of elements depends on whether carbon is present or not. If carbon is present, the order should be: C, then H, then the other elements in alphabetical order of their symbol. If carbon is not present, the elements are listed purely in alphabetic order of their symbol. This is the 'Hill' system used by Chemical Abstracts.
      Returns:
      StrColumn