Package org.rcsb.cif.schema.mm

Class PdbxChemCompModelAtom

java.lang.Object
org.rcsb.cif.schema.DelegatingCategory
org.rcsb.cif.schema.mm.PdbxChemCompModelAtom
All Implemented Interfaces:
Category
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class PdbxChemCompModelAtom
extends DelegatingCategory
Data items in the PDBX_CHEM_COMP_MODEL_ATOM category record coordinates for the chemical component model instance.

  • Constructor Details

  • Method Details

    • createDelegate

      protected Column createDelegate​(String columnName, Column column)
      Overrides:
      createDelegate in class DelegatingCategory

    • getAtomId

      public StrColumn getAtomId()
      The value of _pdbx_chem_comp_model_atom.atom_id uniquely identifies each atom in the PDBX_CHEM_COMP_MODEL_ATOM list.
      Returns:
      StrColumn

    • getOrdinalId

      public IntColumn getOrdinalId()
      The value of _pdbx_chem_comp_model_atom.ordinal_id is an ordinal identifer for each atom in the PDBX_CHEM_COMP_MODEL_ATOM list.
      Returns:
      IntColumn

    • getModelId

      public StrColumn getModelId()
      This data item is a pointer to _pdbx_chem_comp_model.id in the PDBX_CHEM_COMP_MODEL category.
      Returns:
      StrColumn

    • getCharge

      public IntColumn getCharge()
      The net integer charge assigned to this atom. This is the formal charge assignment normally found in chemical diagrams.
      Returns:
      IntColumn

    • getModelCartnX

      public FloatColumn getModelCartnX()
      The x component of the coordinates for this atom in this component model specified as orthogonal angstroms.
      Returns:
      FloatColumn

    • getModelCartnY

      public FloatColumn getModelCartnY()
      The y component of the coordinates for this atom in this component model specified as orthogonal angstroms.
      Returns:
      FloatColumn

    • getModelCartnZ

      public FloatColumn getModelCartnZ()
      The z component of the coordinates for this atom in this component model specified as orthogonal angstroms.
      Returns:
      FloatColumn

    • getTypeSymbol

      public StrColumn getTypeSymbol()
      The code used to identify the atom species representing this atom type. Normally this code is the element symbol.
      Returns:
      StrColumn