Package org.rcsb.cif.schema.mm

Class PdbxCrystalAlignment

java.lang.Object
org.rcsb.cif.schema.DelegatingCategory
org.rcsb.cif.schema.mm.PdbxCrystalAlignment
All Implemented Interfaces:
Category
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class PdbxCrystalAlignment
extends DelegatingCategory
Data in the PDBX_CRYSTAL_ALIGNMENT are produced by log files from programs during indexing

  • Constructor Details

  • Method Details

    • createDelegate

      protected Column createDelegate​(String columnName, Column column)
      Overrides:
      createDelegate in class DelegatingCategory

    • getCrystalId

      public StrColumn getCrystalId()
      The identifer of the crystal.
      Returns:
      StrColumn

    • getOscillationRange

      public FloatColumn getOscillationRange()
      The actual oscillation angle (normally <1.0 degree).
      Returns:
      FloatColumn

    • getOscillationStart

      public FloatColumn getOscillationStart()
      Starting oscillation angle (in degrees) .
      Returns:
      FloatColumn

    • getOscillationEnd

      public FloatColumn getOscillationEnd()
      Ending oscillation angle (in degrees) (default end = start + range).
      Returns:
      FloatColumn

    • getXbeam

      public FloatColumn getXbeam()
      Distance (mm) from the edge of data to beam spot (in X direction).
      Returns:
      FloatColumn

    • getXbeamEsd

      public FloatColumn getXbeamEsd()
      The estimated deviation of xbeam (mm).
      Returns:
      FloatColumn

    • getYbeam

      public FloatColumn getYbeam()
      Distance from (mm) the edge of data to beam spot (in Y direction).
      Returns:
      FloatColumn

    • getYbeamEsd

      public FloatColumn getYbeamEsd()
      The estimated deviation of ybeam (mm).
      Returns:
      FloatColumn

    • getCrysxSpindle

      public FloatColumn getCrysxSpindle()
      Crystal mis-orientation angle (in degree) on x axis (spindle).
      Returns:
      FloatColumn

    • getCrysxSpindleEsd

      public FloatColumn getCrysxSpindleEsd()
      The estimated deviation of orientation angle (in degree) on x axis.
      Returns:
      FloatColumn

    • getCrysyVertical

      public FloatColumn getCrysyVertical()
      Crystal mis-orientation angle (in degree) on y axis (vertical).
      Returns:
      FloatColumn

    • getCrysyVerticalEsd

      public FloatColumn getCrysyVerticalEsd()
      The estimated deviation of orientation angle (in degree) on y axis.
      Returns:
      FloatColumn

    • getCryszBeam

      public FloatColumn getCryszBeam()
      Crystal mis-orientation angle (in degree) on z axis (in beam).
      Returns:
      FloatColumn

    • getCryszBeamEsd

      public FloatColumn getCryszBeamEsd()
      The estimated deviation of orientation angle (in degree) on yzaxis.
      Returns:
      FloatColumn

    • getCrystalToDetectorDistance

      public FloatColumn getCrystalToDetectorDistance()
      Distance (mm) from crystal to detector.
      Returns:
      FloatColumn

    • getCrystalToDetectorDistanceEsd

      public FloatColumn getCrystalToDetectorDistanceEsd()
      The estimated deviation of distance (mm) from crystal to detector.
      Returns:
      FloatColumn

    • getCrossfireX

      public FloatColumn getCrossfireX()
      Angular spread (in degrees) of incident X-ray along the horizontal (x) direction. Default is 0.
      Returns:
      FloatColumn

    • getCrossfireXEsd

      public FloatColumn getCrossfireXEsd()
      The estimated deviation of angular spread (in degrees) of incident X-ray along the horizontal (x) direction.
      Returns:
      FloatColumn

    • getCrossfireY

      public FloatColumn getCrossfireY()
      Angular spread (in degrees) of incident X-ray along the vertical (y) direction. Default is 0.
      Returns:
      FloatColumn

    • getCrossfireYEsd

      public FloatColumn getCrossfireYEsd()
      The estimated deviation of angular spread (in degrees) of incident X-ray along the vertical (y) direction.
      Returns:
      FloatColumn

    • getCrossfireXy

      public FloatColumn getCrossfireXy()
      Correlated xy component of the beam spread. This tends to be zero within error (in degrees^2).
      Returns:
      FloatColumn

    • getCrossfireXyEsd

      public FloatColumn getCrossfireXyEsd()
      The estimated deviation of correlated xy component of the beam spread (in degrees^2).
      Returns:
      FloatColumn