Package org.rcsb.cif.schema.mm

Class PdbxDatabaseStatus

java.lang.Object
org.rcsb.cif.schema.DelegatingCategory
org.rcsb.cif.schema.mm.PdbxDatabaseStatus
All Implemented Interfaces:
Category
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class PdbxDatabaseStatus
extends DelegatingCategory
These are internal RCSB records to keep track of data processing and status of the entry.

  • Constructor Details

  • Method Details

    • createDelegate

      protected Column createDelegate​(String columnName, Column column)
      Overrides:
      createDelegate in class DelegatingCategory

    • getStatusCode

      public StrColumn getStatusCode()
      Code for status of file.
      Returns:
      StrColumn

    • getAuthorReleaseStatusCode

      public StrColumn getAuthorReleaseStatusCode()
      The release status authorized by the depositor.
      Returns:
      StrColumn

    • getStatusCodeSf

      public StrColumn getStatusCodeSf()
      Code for status of structure factor file.
      Returns:
      StrColumn

    • getStatusCodeMr

      public StrColumn getStatusCodeMr()
      Code for status of NMR constraints file.
      Returns:
      StrColumn

    • getDepReleaseCodeCoordinates

      public StrColumn getDepReleaseCodeCoordinates()
      The deposited coordinates for this deposition will be released according the value of this item.
      Returns:
      StrColumn

    • getDepReleaseCodeSequence

      public StrColumn getDepReleaseCodeSequence()
      The sequence information for this deposition will be released according the value of this item. Setting this status code to "RELEASE NOW" indicates that the macromolecular sequence(s) for this entry may be displayed in PDB status reports prior to the release of the entry. Setting this status code to "HOLD FOR RELEASE" conceals the sequence information in PDB status reports until the coordinate data for this entry are released.
      Returns:
      StrColumn

    • getDepReleaseCodeStructFact

      public StrColumn getDepReleaseCodeStructFact()
      The deposited structure factors for this deposition will be released according the value of this item.
      Returns:
      StrColumn

    • getDepReleaseCodeNmrConstraints

      public StrColumn getDepReleaseCodeNmrConstraints()
      The deposited NMR constrait data for this deposition will be released according the value of this item.
      Returns:
      StrColumn

    • getEntryId

      public StrColumn getEntryId()
      The value of _pdbx_database_status.entry_id identifies the data block.
      Returns:
      StrColumn

    • getRecvdDepositForm

      public StrColumn getRecvdDepositForm()
      This code indicates whether the deposition form for an entry has been received.
      Returns:
      StrColumn

    • getDateDepositionForm

      public StrColumn getDateDepositionForm()
      The date the deposition form is received.
      Returns:
      StrColumn

    • getDateBeginDeposition

      public StrColumn getDateBeginDeposition()
      The starting date for the deposition session.
      Returns:
      StrColumn

    • getDateBeginProcessing

      public StrColumn getDateBeginProcessing()
      The starting date for data processing.
      Returns:
      StrColumn

    • getDateEndProcessing

      public StrColumn getDateEndProcessing()
      The completion date for data processing.
      Returns:
      StrColumn

    • getDateBeginReleasePreparation

      public StrColumn getDateBeginReleasePreparation()
      The date on which release processing began.
      Returns:
      StrColumn

    • getDateAuthorReleaseRequest

      public StrColumn getDateAuthorReleaseRequest()
      The date on which the author requests entry release.
      Returns:
      StrColumn

    • getRecvdCoordinates

      public StrColumn getRecvdCoordinates()
      This code indicates whether the coordinates for an entry have been received.
      Returns:
      StrColumn

    • getDateCoordinates

      public StrColumn getDateCoordinates()
      The date the coordinates are received.
      Returns:
      StrColumn

    • getRecvdStructFact

      public StrColumn getRecvdStructFact()
      This code indicates whether the structure factors for an entry have been received.
      Returns:
      StrColumn

    • getDateStructFact

      public StrColumn getDateStructFact()
      The date the structure factors are received.
      Returns:
      StrColumn

    • getRecvdNmrConstraints

      public StrColumn getRecvdNmrConstraints()
      This code indicates whether the NMR contraint data for an entry have been received.
      Returns:
      StrColumn

    • getDateNmrConstraints

      public StrColumn getDateNmrConstraints()
      The date the structure factors are received.
      Returns:
      StrColumn

    • getRecvdInternalApproval

      public StrColumn getRecvdInternalApproval()
      This code indicates whether the internal approval for an entry have been received.
      Returns:
      StrColumn

    • getRecvdManuscript

      public StrColumn getRecvdManuscript()
      This code indicates whether the manuscript for an entry has been received.
      Returns:
      StrColumn

    • getDateManuscript

      public StrColumn getDateManuscript()
      The date the manuscript is received.
      Returns:
      StrColumn

    • getNameDepositor

      public StrColumn getNameDepositor()
      The last name of the depositor to be used in correspondance.
      Returns:
      StrColumn

    • getRecvdAuthorApproval

      public StrColumn getRecvdAuthorApproval()
      This code indicates whether the author's approval for an entry has been received.
      Returns:
      StrColumn

    • getAuthorApprovalType

      public StrColumn getAuthorApprovalType()
      This code indicates whether the author's approval for an entry was received explicitly or implicitly. The latter is automatically implied by failure to respond to the validation summary within the prescribed period.
      Returns:
      StrColumn

    • getDateAuthorApproval

      public StrColumn getDateAuthorApproval()
      The date the author's approval is received.
      Returns:
      StrColumn

    • getRecvdInitialDepositionDate

      public StrColumn getRecvdInitialDepositionDate()
      The date of initial deposition. (The first message for deposition has been received.)
      Returns:
      StrColumn

    • getDateSubmitted

      public StrColumn getDateSubmitted()
      The date of complete deposition. This corresponds to the date at which the PDB identifier is assigned.
      Returns:
      StrColumn

    • getRcsbAnnotator

      public StrColumn getRcsbAnnotator()
      The initials of the annotator processing this entry.
      Returns:
      StrColumn

    • getDateOfSfRelease

      public StrColumn getDateOfSfRelease()
      The date of PDB/RCSB release. This corresponds to the date at which the entry is placed into the public archive.
      Returns:
      StrColumn

    • getDateOfMrRelease

      public StrColumn getDateOfMrRelease()
      The date of PDB/RCSB release. This corresponds to the date at which the entry is placed into the public archive.
      Returns:
      StrColumn

    • getDateOfPDBRelease

      public StrColumn getDateOfPDBRelease()
      PDB release date. This is the date that appears in the PDB REVDAT record.
      Returns:
      StrColumn

    • getDateHoldCoordinates

      public StrColumn getDateHoldCoordinates()
      At an author's request, a coordinate entry may be held after processing for some period of time.
      Returns:
      StrColumn

    • getDateHoldStructFact

      public StrColumn getDateHoldStructFact()
      At an author's request, the structure factors may be held after processing for some period of time.
      Returns:
      StrColumn

    • getDateHoldNmrConstraints

      public StrColumn getDateHoldNmrConstraints()
      At an author's request, the NMR constraint data may be held after processing for some period of time.
      Returns:
      StrColumn

    • getHoldForPublication

      public StrColumn getHoldForPublication()
      At an author's request, an entry is to be held until publication.
      Returns:
      StrColumn

    • getSGEntry

      public StrColumn getSGEntry()
      This code indicates whether the entry belongs to Structural Genomics Project.
      Returns:
      StrColumn

    • getPdbDateOfAuthorApproval

      public StrColumn getPdbDateOfAuthorApproval()
      This is the date when PDB received the author's approval for an entry which has been processed by NDB. (This is a place holder for entries processed before Jan. 1, 1996.)
      Returns:
      StrColumn

    • getDepositSite

      public StrColumn getDepositSite()
      The site where the file was deposited.
      Returns:
      StrColumn

    • getProcessSite

      public StrColumn getProcessSite()
      The site where the file was deposited.
      Returns:
      StrColumn

    • getDepReleaseCodeChemicalShifts

      public StrColumn getDepReleaseCodeChemicalShifts()
      The deposited chemical shift data for this deposition will be released according the value of this item.
      Returns:
      StrColumn

    • getRecvdChemicalShifts

      public StrColumn getRecvdChemicalShifts()
      This code indicates whether the chemical shift data for an entry have been received.
      Returns:
      StrColumn

    • getDateChemicalShifts

      public StrColumn getDateChemicalShifts()
      The date the chemical shift data are received.
      Returns:
      StrColumn

    • getDateHoldChemicalShifts

      public StrColumn getDateHoldChemicalShifts()
      At an author's request, the chemical shift data may be held after processing for some period of time.
      Returns:
      StrColumn

    • getStatusCodeCs

      public StrColumn getStatusCodeCs()
      Code for status of chemical shift data file.
      Returns:
      StrColumn

    • getDateOfCsRelease

      public StrColumn getDateOfCsRelease()
      The date of PDB release. This corresponds to the date at which the chemical shift data is placed into the public archive.
      Returns:
      StrColumn

    • getDateNmrData

      public StrColumn getDateNmrData()
      The date the unified NMR data are received.
      Returns:
      StrColumn

    • getDateHoldNmrData

      public StrColumn getDateHoldNmrData()
      At an author's request, the unified NMR data may be held after processing for some period of time.
      Returns:
      StrColumn

    • getDateOfNmrDataRelease

      public StrColumn getDateOfNmrDataRelease()
      The date of PDB release. This corresponds to the date at which the unified NMR data are placed into the public archive.
      Returns:
      StrColumn

    • getDepReleaseCodeNmrData

      public StrColumn getDepReleaseCodeNmrData()
      The deposited unified NMR data for this deposition will be released according the value of this item.
      Returns:
      StrColumn

    • getRecvdNmrData

      public StrColumn getRecvdNmrData()
      This code indicates whether the unified NMR data for an entry have been received.
      Returns:
      StrColumn

    • getStatusCodeNmrData

      public StrColumn getStatusCodeNmrData()
      Code for status of unified NMR data file.
      Returns:
      StrColumn

    • getMethodsDevelopmentCategory

      public StrColumn getMethodsDevelopmentCategory()
      The methods development category in which this entry has been placed.
      Returns:
      StrColumn

    • getPdbFormatCompatible

      public StrColumn getPdbFormatCompatible()
      A flag indicating that the entry is compatible with the PDB format. A value of 'N' indicates that the no PDB format data file is corresponding to this entry is available in the PDB archive.
      Returns:
      StrColumn

    • getPostRelStatus

      public StrColumn getPostRelStatus()
      For author initiated replacement, the current status of the replacement entry
      Returns:
      StrColumn

    • getPostRelRecvdCoord

      public StrColumn getPostRelRecvdCoord()
      For author initiated replacement, indicates if new coordinates have been provided
      Returns:
      StrColumn

    • getPostRelRecvdCoordDate

      public StrColumn getPostRelRecvdCoordDate()
      For author initiated replacement, date new coordinates have been provided
      Returns:
      StrColumn

    • getAuthReqRelDate

      public StrColumn getAuthReqRelDate()
      The release date requested by the depositor. This is used when the depositor has provided the release hold date expiration or a one year hold interval.
      Returns:
      StrColumn

    • getNdbTid

      public StrColumn getNdbTid()
      Temporary NDB ID.
      Returns:
      StrColumn

    • getStatusCoordinatesInNDB

      public StrColumn getStatusCoordinatesInNDB()
      Give information about status of coordinates of an entry in NDB.
      Returns:
      StrColumn

    • getDateRevised

      public StrColumn getDateRevised()
      The date of a revision. This corresponds to the date at which the entry was updated and a revision entry created.
      Returns:
      StrColumn

    • getReplacedEntryId

      public StrColumn getReplacedEntryId()
      The NDB ID that this entry replaced.
      Returns:
      StrColumn

    • getRevisionId

      public StrColumn getRevisionId()
      The NDB ID for entry that replaces this entry.
      Returns:
      StrColumn

    • getRevisionDescription

      public StrColumn getRevisionDescription()
      A description of the revision to this entry.
      Returns:
      StrColumn

    • getPdbxAnnotator

      public StrColumn getPdbxAnnotator()
      The initials of the annotator processing this entry.
      Returns:
      StrColumn

    • getDateOfNDBRelease

      public StrColumn getDateOfNDBRelease()
      The date of NDB/RCSB release. This corresponds to the date at which the entry is placed into the public archive.
      Returns:
      StrColumn

    • getDateReleasedToPDB

      public StrColumn getDateReleasedToPDB()
      The date on which the entry is sent to PDB.
      Returns:
      StrColumn

    • getSkipPDBREMARK500

      public StrColumn getSkipPDBREMARK500()
      This code indicates whether to skip production of PDB REMARK 500 for this file.
      Returns:
      StrColumn

    • getSkipPDBREMARK

      public StrColumn getSkipPDBREMARK()
      This code indicates whether to skip production of a PDB REMARK for this file.
      Returns:
      StrColumn

    • getTitleSuppression

      public StrColumn getTitleSuppression()
      This code indicates whether to suppress the entry title.
      Returns:
      StrColumn