Package org.rcsb.cif.schema.mm

Class PdbxEntitySrcGenChrom

java.lang.Object
org.rcsb.cif.schema.DelegatingCategory
org.rcsb.cif.schema.mm.PdbxEntitySrcGenChrom
All Implemented Interfaces:
Category
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class PdbxEntitySrcGenChrom
extends DelegatingCategory
This category contains details for the chromatographic steps used in the purification of the protein.

  • Constructor Details

  • Method Details

    • createDelegate

      protected Column createDelegate​(String columnName, Column column)
      Overrides:
      createDelegate in class DelegatingCategory

    • getEntryId

      public StrColumn getEntryId()
      The value of _pdbx_entity_src_gen_chrom.entry_id uniquely identifies a sample consisting of one or more proteins whose structure is to be determined. This is a pointer to _entry.id. This item may be a site dependent bar code.
      Returns:
      StrColumn

    • getEntityId

      public StrColumn getEntityId()
      The value of _pdbx_entity_src_gen_chrom.entity_id uniquely identifies each protein contained in the project target complex proteins whose structure is to be determined. This data item is a pointer to _entity.id in the ENTITY category. This item may be a site dependent bar code.
      Returns:
      StrColumn

    • getStepId

      public IntColumn getStepId()
      This item is the unique identifier for this chromatography step.
      Returns:
      IntColumn

    • getNextStepId

      public IntColumn getNextStepId()
      This item unique identifier for the next production step. This allows a workflow to have multiple entry points leading to a single product.
      Returns:
      IntColumn

    • getEndConstructId

      public StrColumn getEndConstructId()
      This item is a pointer to pdbx_construct.id in the PDBX_CONSTRUCT category. The referenced sequence is expected to be the amino acid sequence of the expressed product after the chromatography step.
      Returns:
      StrColumn

    • getRobotId

      public StrColumn getRobotId()
      This data item is a pointer to pdbx_robot_system.id in the PDBX_ROBOT_SYSTEM category.
      Returns:
      StrColumn

    • getDate

      public StrColumn getDate()
      The date of production step.
      Returns:
      StrColumn

    • getColumnType

      public StrColumn getColumnType()
      The type of column used in this step.
      Returns:
      StrColumn

    • getColumnVolume

      public FloatColumn getColumnVolume()
      The volume of the column used in this step.
      Returns:
      FloatColumn

    • getColumnTemperature

      public FloatColumn getColumnTemperature()
      The temperature in degrees celsius at which this column was run.
      Returns:
      FloatColumn

    • getEquilibrationBufferId

      public StrColumn getEquilibrationBufferId()
      This item is a pointer to pdbx_buffer.id in the PDBX_BUFFER category. The referenced buffer is that in which the column was equilibrated.
      Returns:
      StrColumn

    • getFlowRate

      public FloatColumn getFlowRate()
      The rate at which the equilibration buffer flowed through the column.
      Returns:
      FloatColumn

    • getElutionBufferId

      public StrColumn getElutionBufferId()
      This item is a pointer to pdbx_buffer.id in the PDBX_BUFFER category. The referenced buffer is that with which the protein was eluted.
      Returns:
      StrColumn

    • getElutionProtocol

      public StrColumn getElutionProtocol()
      Details of the elution protocol.
      Returns:
      StrColumn

    • getSamplePrepDetails

      public StrColumn getSamplePrepDetails()
      Details of the sample preparation prior to running the column.
      Returns:
      StrColumn

    • getSampleVolume

      public FloatColumn getSampleVolume()
      The volume of protein solution run on the column.
      Returns:
      FloatColumn

    • getSampleConcentration

      public FloatColumn getSampleConcentration()
      The concentration of the protein solution put onto the column.
      Returns:
      FloatColumn

    • getSampleConcMethod

      public StrColumn getSampleConcMethod()
      The method used to determine the concentration of the protein solution put onto the column.
      Returns:
      StrColumn

    • getVolumePooledFractions

      public FloatColumn getVolumePooledFractions()
      The total volume of all the fractions pooled to give the purified protein solution.
      Returns:
      FloatColumn

    • getYieldPooledFractions

      public FloatColumn getYieldPooledFractions()
      The yield in milligrams of protein recovered in the pooled fractions.
      Returns:
      FloatColumn

    • getYieldMethod

      public StrColumn getYieldMethod()
      The method used to determine the yield
      Returns:
      StrColumn

    • getPostTreatment

      public StrColumn getPostTreatment()
      Details of any post-chromatographic treatment of the protein sample.
      Returns:
      StrColumn