Package org.rcsb.cif.schema.mm

Class PdbxEntitySrcGenCloneRecombination

java.lang.Object

org.rcsb.cif.schema.DelegatingCategory

org.rcsb.cif.schema.mm.PdbxEntitySrcGenCloneRecombination

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class PdbxEntitySrcGenCloneRecombination
extends DelegatingCategory

This category contains details for the recombination-based cloning steps used in the overall protein production process. It is assumed that these reactions will use commercially available kits. _pdbx_entity_src_gen_clone_recombination.clone_step_id in this category must point at a defined _pdbx_entity_src_gen_clone.step_id. The details in PDBX_ENTITY_SRC_GEN_CLONE_RECOMBINATION extend the details in PDBX_ENTITY_SRC_GEN_CLONE to cover recombination dependent cloning steps.

Nested Class Summary

Nested classes/interfaces inherited from class org.rcsb.cif.schema.DelegatingCategory

DelegatingCategory.DelegatingCifCoreCategory

Nested classes/interfaces inherited from interface org.rcsb.cif.model.Category

Category.EmptyCategory

Field Summary

Fields inherited from class org.rcsb.cif.schema.DelegatingCategory

delegate

Constructor Summary

Constructors

Constructor	Description
PdbxEntitySrcGenCloneRecombination(Category delegate)

Method Summary

Modifier and Type	Method	Description
protected Column	createDelegate(String columnName, Column column)
StrColumn	getDetails()	Any details to be associated with this recombination step, e.g.
StrColumn	getEntityId()	This item is a pointer to _pdbx_entity_src_gen_clone.entity_id in the PDBX_ENTITY_SRC_GEN_CLONE category.
StrColumn	getEntryId()	This item is a pointer to _pdbx_entity_src_gen_clone.entry_id in the PDBX_ENTITY_SRC_GEN_CLONE category.
StrColumn	getRecombinationEnzymes()	The names of the enzymes used for this recombination step.
IntColumn	getStepId()	This item is a pointer to _pdbx_entity_src_gen_clone.step_id in the PDBX_ENTITY_SRC_GEN_CLONE category.
StrColumn	getSystem()	The name of the recombination system.

Methods inherited from class org.rcsb.cif.schema.DelegatingCategory

getCategoryName, getColumn, getColumns, getRowCount

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columns, getColumn, isDefined

Constructor Details

PdbxEntitySrcGenCloneRecombination

public PdbxEntitySrcGenCloneRecombination(Category delegate)

Method Details

createDelegate

protected Column createDelegate(String columnName, Column column)

Overrides:

createDelegate in class DelegatingCategory

getEntryId

public StrColumn getEntryId()

This item is a pointer to _pdbx_entity_src_gen_clone.entry_id in the PDBX_ENTITY_SRC_GEN_CLONE category.

Returns:

StrColumn

getEntityId

public StrColumn getEntityId()

This item is a pointer to _pdbx_entity_src_gen_clone.entity_id in the PDBX_ENTITY_SRC_GEN_CLONE category.

Returns:

StrColumn

getStepId

public IntColumn getStepId()

This item is a pointer to _pdbx_entity_src_gen_clone.step_id in the PDBX_ENTITY_SRC_GEN_CLONE category.

Returns:

IntColumn

getSystem

public StrColumn getSystem()

The name of the recombination system.

Returns:

StrColumn

getRecombinationEnzymes

public StrColumn getRecombinationEnzymes()

The names of the enzymes used for this recombination step.

Returns:

StrColumn

getDetails

public StrColumn getDetails()

Any details to be associated with this recombination step, e.g. the protocol or differences from the manufacturer's specified protocol.

Returns:

StrColumn