Package org.rcsb.cif.schema.mm

Class PdbxEntitySrcGenFract

java.lang.Object
org.rcsb.cif.schema.DelegatingCategory
org.rcsb.cif.schema.mm.PdbxEntitySrcGenFract
All Implemented Interfaces:
Category
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class PdbxEntitySrcGenFract
extends DelegatingCategory
This category contains details for the fraction steps used in the overall protein production process. Examples of fractionation steps are centrifugation and magnetic bead pull-down purification.

  • Constructor Details

  • Method Details

    • createDelegate

      protected Column createDelegate​(String columnName, Column column)
      Overrides:
      createDelegate in class DelegatingCategory

    • getEntryId

      public StrColumn getEntryId()
      The value of _pdbx_entity_src_gen_fract.entry_id uniquely identifies a sample consisting of one or more proteins whose structure is to be determined. This is a pointer to _entry.id. This item may be a site dependent bar code.
      Returns:
      StrColumn

    • getEntityId

      public StrColumn getEntityId()
      The value of _pdbx_entity_src_gen_fract.entity_id uniquely identifies each protein contained in the project target protein complex whose structure is to be determined. This data item is a pointer to _entity.id in the ENTITY category. This item may be a site dependent bar code.
      Returns:
      StrColumn

    • getStepId

      public IntColumn getStepId()
      This item is the unique identifier for this fractionation step.
      Returns:
      IntColumn

    • getNextStepId

      public IntColumn getNextStepId()
      This item unique identifier for the next production step. This allows a workflow to have multiple entry points leading to a single product.
      Returns:
      IntColumn

    • getEndConstructId

      public StrColumn getEndConstructId()
      This item is a pointer to pdbx_construct.id in the PDBX_CONSTRUCT category. The referenced sequence is expected to be the amino acid sequence of the expressed product after the fractionation step.
      Returns:
      StrColumn

    • getRobotId

      public StrColumn getRobotId()
      This data item is a pointer to pdbx_robot_system.id in the PDBX_ROBOT_SYSTEM category.
      Returns:
      StrColumn

    • getDate

      public StrColumn getDate()
      The date of this production step.
      Returns:
      StrColumn

    • getMethod

      public StrColumn getMethod()
      This item describes the method of fractionation.
      Returns:
      StrColumn

    • getTemperature

      public FloatColumn getTemperature()
      The temperature in degrees celsius at which the fractionation was performed.
      Returns:
      FloatColumn

    • getDetails

      public StrColumn getDetails()
      String value containing details of the fractionation.
      Returns:
      StrColumn

    • getProteinLocation

      public StrColumn getProteinLocation()
      The fraction containing the protein of interest.
      Returns:
      StrColumn

    • getProteinVolume

      public FloatColumn getProteinVolume()
      The volume of the fraction containing the protein.
      Returns:
      FloatColumn

    • getProteinYield

      public FloatColumn getProteinYield()
      The yield in milligrams of protein from the fractionation.
      Returns:
      FloatColumn

    • getProteinYieldMethod

      public StrColumn getProteinYieldMethod()
      The method used to determine the yield
      Returns:
      StrColumn