Package org.rcsb.cif.schema.mm

Class PdbxEntitySrcGenProdDigest

java.lang.Object
org.rcsb.cif.schema.DelegatingCategory
org.rcsb.cif.schema.mm.PdbxEntitySrcGenProdDigest
All Implemented Interfaces:
Category
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class PdbxEntitySrcGenProdDigest
extends DelegatingCategory
This category contains details for the DIGEST steps used in the overall protein production process. The digestion is assumed to be applied to the result of the previous production step, or the gene source if this is the first production step.

  • Constructor Details

  • Method Details

    • createDelegate

      protected Column createDelegate​(String columnName, Column column)
      Overrides:
      createDelegate in class DelegatingCategory

    • getEntryId

      public StrColumn getEntryId()
      The value of _pdbx_entity_src_gen_prod_digest.entry_id uniquely identifies a sample consisting of one or more proteins whose structure is to be determined. This is a pointer to _entry.id. This item may be a site dependent bar code.
      Returns:
      StrColumn

    • getEntityId

      public StrColumn getEntityId()
      The value of _pdbx_entity_src_gen_prod_digest.entity_id uniquely identifies each protein contained in the project target protein complex whose structure is to be determined. This data item is a pointer to _entity.id in the ENTITY category. This item may be a site dependent bar code.
      Returns:
      StrColumn

    • getStepId

      public IntColumn getStepId()
      This item is the unique identifier for this digestion step.
      Returns:
      IntColumn

    • getNextStepId

      public IntColumn getNextStepId()
      This item unique identifier for the next production step. This allows a workflow to have multiple entry points leading to a single product.
      Returns:
      IntColumn

    • getEndConstructId

      public StrColumn getEndConstructId()
      This item is a pointer to pdbx_construct.id in the PDBX_CONSTRUCT category. The referenced nucleic acid sequence is that of the digest product
      Returns:
      StrColumn

    • getRobotId

      public StrColumn getRobotId()
      This data item is a pointer to pdbx_robot_system.id in the PDBX_ROBOT_SYSTEM category.
      Returns:
      StrColumn

    • getDate

      public StrColumn getDate()
      The date of this production step.
      Returns:
      StrColumn

    • getRestrictionEnzyme1

      public StrColumn getRestrictionEnzyme1()
      The first enzyme used in the restriction digestion. The sites at which this cuts can be derived from the sequence.
      Returns:
      StrColumn

    • getRestrictionEnzyme2

      public StrColumn getRestrictionEnzyme2()
      The second enzyme used in the restriction digestion. The sites at which this cuts can be derived from the sequence.
      Returns:
      StrColumn

    • getPurificationDetails

      public StrColumn getPurificationDetails()
      String value containing details of any purification of the product of the digestion.
      Returns:
      StrColumn

    • getSummary

      public StrColumn getSummary()
      Summary of the details of restriction digestion any purification of the product of the digestion.
      Returns:
      StrColumn