Package org.rcsb.cif.schema.mm

Class PdbxEntitySrcGenProdPcr

java.lang.Object
org.rcsb.cif.schema.DelegatingCategory
org.rcsb.cif.schema.mm.PdbxEntitySrcGenProdPcr
All Implemented Interfaces:
Category
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class PdbxEntitySrcGenProdPcr
extends DelegatingCategory
This category contains details for the PCR steps used in the overall protein production process. The PCR is assumed to be applied to the result of the previous production step, or the gene source if this is the first production step.

  • Constructor Details

  • Method Details

    • createDelegate

      protected Column createDelegate​(String columnName, Column column)
      Overrides:
      createDelegate in class DelegatingCategory

    • getEntryId

      public StrColumn getEntryId()
      The value of _pdbx_entity_src_gen_prod_pcr.entry_id uniquely identifies a sample consisting of one or more proteins whose structure is to be determined. This is a pointer to _entry.id. This item may be a site dependent bar code.
      Returns:
      StrColumn

    • getEntityId

      public StrColumn getEntityId()
      The value of _pdbx_entity_src_gen_prod_pcr.entity_id uniquely identifies each protein contained in the project target protein complex whose structure is to be determined. This data item is a pointer to _entity.id in the ENTITY category. This item may be a site dependent bar code.
      Returns:
      StrColumn

    • getStepId

      public IntColumn getStepId()
      This item is the unique identifier for this PCR step.
      Returns:
      IntColumn

    • getNextStepId

      public IntColumn getNextStepId()
      This item unique identifier for the next production step. This allows a workflow to have multiple entry points leading to a single product.
      Returns:
      IntColumn

    • getEndConstructId

      public StrColumn getEndConstructId()
      This item is a pointer to pdbx_construct.id in the PDBX_CONSTRUCT category. The referenced nucleic acid sequence is that of the PCR product.
      Returns:
      StrColumn

    • getRobotId

      public StrColumn getRobotId()
      This data item is a pointer to pdbx_robot_system.id in the PDBX_ROBOT_SYSTEM category. The referenced robot is the robot responsible for the PCR reaction (normally the heat cycler).
      Returns:
      StrColumn

    • getDate

      public StrColumn getDate()
      The date of this production step.
      Returns:
      StrColumn

    • getForwardPrimerId

      public StrColumn getForwardPrimerId()
      This item is a pointer to pdbx_construct.id in the PDBX_CONSTRUCT category. The referenced nucleic acid sequence is that of the forward primer.
      Returns:
      StrColumn

    • getReversePrimerId

      public StrColumn getReversePrimerId()
      This item is a pointer to pdbx_construct.id in the PDBX_CONSTRUCT category. The referenced nucleic acid sequence is that of the reverse primer.
      Returns:
      StrColumn

    • getReactionDetails

      public StrColumn getReactionDetails()
      String value containing details of the PCR reaction.
      Returns:
      StrColumn

    • getPurificationDetails

      public StrColumn getPurificationDetails()
      String value containing details of any purification of the product of the PCR reaction.
      Returns:
      StrColumn

    • getSummary

      public StrColumn getSummary()
      Summary of the details of the PCR reaction any purification of the product of the PCR reaction.
      Returns:
      StrColumn