Package org.rcsb.cif.schema.mm

Class PdbxEntitySrcGenProteolysis

java.lang.Object
org.rcsb.cif.schema.DelegatingCategory
org.rcsb.cif.schema.mm.PdbxEntitySrcGenProteolysis
All Implemented Interfaces:
Category
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class PdbxEntitySrcGenProteolysis
extends DelegatingCategory
This category contains details for the protein purification tag removal steps used in the overall protein production process

  • Constructor Details

  • Method Details

    • createDelegate

      protected Column createDelegate​(String columnName, Column column)
      Overrides:
      createDelegate in class DelegatingCategory

    • getEntryId

      public StrColumn getEntryId()
      The value of _pdbx_entity_src_gen_proteolysis.entry_id uniquely identifies a sample consisting of one or more proteins whose structure is to be determined. This is a pointer to _entry.id. This item may be a site dependent bar code.
      Returns:
      StrColumn

    • getEntityId

      public StrColumn getEntityId()
      The value of _pdbx_entity_src_gen_proteolysis.entity_id uniquely identifies each protein contained in the project target complex proteins whose structure is to be determined. This data item is a pointer to _entity.id in the ENTITY category. This item may be a site dependent bar code.
      Returns:
      StrColumn

    • getStepId

      public IntColumn getStepId()
      This item is the unique identifier for this tag removal step.
      Returns:
      IntColumn

    • getNextStepId

      public IntColumn getNextStepId()
      This item unique identifier for the next production step. This allows a workflow to have multiple entry points leading to a single product.
      Returns:
      IntColumn

    • getEndConstructId

      public StrColumn getEndConstructId()
      This item is a pointer to pdbx_construct.id in the PDBX_CONSTRUCT category. The referenced sequence is expected to be the amino acid sequence of the expressed product after the proteolysis step.
      Returns:
      StrColumn

    • getRobotId

      public StrColumn getRobotId()
      This data item is a pointer to pdbx_robot_system.id in the PDBX_ROBOT_SYSTEM category.
      Returns:
      StrColumn

    • getDate

      public StrColumn getDate()
      The date of production step.
      Returns:
      StrColumn

    • getDetails

      public StrColumn getDetails()
      Details of this tag removal step.
      Returns:
      StrColumn

    • getProtease

      public StrColumn getProtease()
      The name of the protease used for cleavage.
      Returns:
      StrColumn

    • getProteinProteaseRatio

      public FloatColumn getProteinProteaseRatio()
      The ratio of protein to protease used for the cleavage. = mol protein / mol protease
      Returns:
      FloatColumn

    • getCleavageBufferId

      public StrColumn getCleavageBufferId()
      This item is a pointer to pdbx_buffer.id in the PDBX_BUFFER category. The referenced buffer is that in which the cleavage was performed.
      Returns:
      StrColumn

    • getCleavageTemperature

      public FloatColumn getCleavageTemperature()
      The temperature in degrees celsius at which the cleavage was performed.
      Returns:
      FloatColumn

    • getCleavageTime

      public FloatColumn getCleavageTime()
      The time in minutes for the cleavage reaction
      Returns:
      FloatColumn