Package org.rcsb.cif.schema.mm

Class PdbxEntitySrcGenPure

java.lang.Object
org.rcsb.cif.schema.DelegatingCategory
org.rcsb.cif.schema.mm.PdbxEntitySrcGenPure
All Implemented Interfaces:
Category
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class PdbxEntitySrcGenPure
extends DelegatingCategory
This category contains details for the final purified protein product. Note that this category does not contain the amino acid sequence of the protein. The sequence will be found in the ENTITY_POLY_SEQ entry with matching entity_id. Only one PDBX_ENTITY_SRC_GEN_PURE category is allowed per entity, hence there is no step_id for this category.

  • Constructor Details

  • Method Details

    • createDelegate

      protected Column createDelegate​(String columnName, Column column)
      Overrides:
      createDelegate in class DelegatingCategory

    • getEntryId

      public StrColumn getEntryId()
      The value of _pdbx_entity_src_gen_pure.entry_id uniquely identifies a sample consisting of one or more proteins whose structure is to be determined. This is a pointer to _entry.id. This item may be a site dependent bar code.
      Returns:
      StrColumn

    • getEntityId

      public StrColumn getEntityId()
      The value of _pdbx_entity_src_gen_pure.entity_id uniquely identifies each protein contained in the project target complex proteins whose structure is to be determined. This data item is a pointer to _entity.id in the ENTITY category. This item may be a site dependent bar code.
      Returns:
      StrColumn

    • getStepId

      public IntColumn getStepId()
      This item unique identifier the production step.
      Returns:
      IntColumn

    • getProductId

      public StrColumn getProductId()
      When present, this item should be a globally unique identifier that identifies the final product. It is envisaged that this should be the same as and product code associated with the sample and would provide the key by which information about the production process may be extracted from the protein production facility. For files describing the protein production process (i.e. where _entity.type is 'P' or 'E') this should have the same value as _entry.id
      Returns:
      StrColumn

    • getDate

      public StrColumn getDate()
      The date of production step.
      Returns:
      StrColumn

    • getConcDeviceId

      public StrColumn getConcDeviceId()
      This data item is a pointer to pdbx_robot_system.id in the PDBX_ROBOT_SYSTEM category.
      Returns:
      StrColumn

    • getConcDetails

      public StrColumn getConcDetails()
      Details of the protein concentration procedure
      Returns:
      StrColumn

    • getConcAssayMethod

      public StrColumn getConcAssayMethod()
      The method used to measure the protein concentration
      Returns:
      StrColumn

    • getProteinConcentration

      public FloatColumn getProteinConcentration()
      The final concentration of the protein.
      Returns:
      FloatColumn

    • getProteinYield

      public FloatColumn getProteinYield()
      The yield of protein in milligrams.
      Returns:
      FloatColumn

    • getProteinPurity

      public FloatColumn getProteinPurity()
      The purity of the protein (percent).
      Returns:
      FloatColumn

    • getProteinOligomericState

      public IntColumn getProteinOligomericState()
      The oligomeric state of the protein. Monomeric is 1, dimeric 2, etc.
      Returns:
      IntColumn

    • getStorageBufferId

      public StrColumn getStorageBufferId()
      This item is a pointer to pdbx_buffer.id in the PDBX_BUFFER category. The referenced buffer is that in which the protein was stored.
      Returns:
      StrColumn

    • getStorageTemperature

      public FloatColumn getStorageTemperature()
      The temperature in degrees celsius at which the protein was stored.
      Returns:
      FloatColumn

    • getSummary

      public StrColumn getSummary()
      Summary of the details of protein purification method used to obtain the final protein product. This description should include any lysis, fractionation, proteolysis, refolding, chromatography used as well as the method used the characterize the final product.
      Returns:
      StrColumn