Package org.rcsb.cif.schema.mm

Class PdbxEntitySrcSyn

java.lang.Object
org.rcsb.cif.schema.DelegatingCategory
org.rcsb.cif.schema.mm.PdbxEntitySrcSyn
All Implemented Interfaces:
Category
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class PdbxEntitySrcSyn
extends DelegatingCategory
The data items in category PDBX_ENTITY_SRC_SYN record the source details about chemically synthesized molecules.

  • Constructor Details

  • Method Details

    • createDelegate

      protected Column createDelegate​(String columnName, Column column)
      Overrides:
      createDelegate in class DelegatingCategory

    • getDetails

      public StrColumn getDetails()
      A description of special aspects of the source for the synthetic entity.
      Returns:
      StrColumn

    • getOrganismScientific

      public StrColumn getOrganismScientific()
      The scientific name of the organism from which the sequence of the synthetic entity was derived.
      Returns:
      StrColumn

    • getOrganismCommonName

      public StrColumn getOrganismCommonName()
      The common name of the organism from which the sequence of the synthetic entity was derived.
      Returns:
      StrColumn

    • getStrain

      public StrColumn getStrain()
      The strain of the organism from which the sequence of the synthetic entity was derived.
      Returns:
      StrColumn

    • getNcbiTaxonomyId

      public StrColumn getNcbiTaxonomyId()
      NCBI Taxonomy identifier of the organism from which the sequence of the synthetic entity was derived. Reference: Wheeler DL, Chappey C, Lash AE, Leipe DD, Madden TL, Schuler GD, Tatusova TA, Rapp BA (2000). Database resources of the National Center for Biotechnology Information. Nucleic Acids Res 2000 Jan 1;28(1):10-4 Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Rapp BA, Wheeler DL (2000). GenBank. Nucleic Acids Res 2000 Jan 1;28(1):15-18.
      Returns:
      StrColumn

    • getEntityId

      public StrColumn getEntityId()
      This data item is a pointer to _entity.id in the ENTITY category.
      Returns:
      StrColumn

    • getPdbxSrcId

      public IntColumn getPdbxSrcId()
      This data item is an ordinal identifier for pdbx_entity_src_syn data records.
      Returns:
      IntColumn

    • getPdbxAltSourceFlag

      public StrColumn getPdbxAltSourceFlag()
      This data item identifies cases in which an alternative source modeled.
      Returns:
      StrColumn

    • getPdbxBegSeqNum

      public IntColumn getPdbxBegSeqNum()
      The beginning polymer sequence position for the polymer section corresponding to this source. A reference to the sequence position in the entity_poly category.
      Returns:
      IntColumn

    • getPdbxEndSeqNum

      public IntColumn getPdbxEndSeqNum()
      The ending polymer sequence position for the polymer section corresponding to this source. A reference to the sequence position in the entity_poly category.
      Returns:
      IntColumn