Package org.rcsb.cif.schema.mm

Class PdbxNonpolyScheme

java.lang.Object

org.rcsb.cif.schema.DelegatingCategory

org.rcsb.cif.schema.mm.PdbxNonpolyScheme

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class PdbxNonpolyScheme
extends DelegatingCategory

The PDBX_NONPOLY_SCHEME category provides residue level nomenclature mapping for non-polymer entities.

Nested Class Summary

Nested classes/interfaces inherited from class org.rcsb.cif.schema.DelegatingCategory

DelegatingCategory.DelegatingCifCoreCategory

Nested classes/interfaces inherited from interface org.rcsb.cif.model.Category

Category.EmptyCategory

Field Summary

Fields inherited from class org.rcsb.cif.schema.DelegatingCategory

delegate

Constructor Summary

Constructors

Constructor	Description
PdbxNonpolyScheme(Category delegate)

Method Summary

Modifier and Type	Method	Description
protected Column	createDelegate(String columnName, Column column)
StrColumn	getAsymId()	Pointer to _atom_site.label_asym_id.
StrColumn	getAuthMonId()	Author provided residue identifier.
StrColumn	getAuthSeqNum()	Author provided residue numbering.
StrColumn	getEntityId()	Pointer to _atom_site.label_entity_id.
StrColumn	getMonId()	Pointer to _atom_site.label_comp_id.
StrColumn	getNdbSeqNum()	NDB/RCSB residue number.
StrColumn	getPdbInsCode()	PDB insertion code.
StrColumn	getPdbMonId()	PDB residue identifier.
StrColumn	getPdbSeqNum()	PDB residue number.
StrColumn	getPdbStrandId()	PDB strand/chain id.

Methods inherited from class org.rcsb.cif.schema.DelegatingCategory

getCategoryName, getColumn, getColumns, getRowCount

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columns, getColumn, isDefined

Constructor Details

PdbxNonpolyScheme

public PdbxNonpolyScheme(Category delegate)

Method Details

createDelegate

protected Column createDelegate(String columnName, Column column)

Overrides:

createDelegate in class DelegatingCategory

getAsymId

public StrColumn getAsymId()

Pointer to _atom_site.label_asym_id.

Returns:

StrColumn

getEntityId

public StrColumn getEntityId()

Pointer to _atom_site.label_entity_id.

Returns:

StrColumn

getMonId

public StrColumn getMonId()

Pointer to _atom_site.label_comp_id.

Returns:

StrColumn

getPdbStrandId

public StrColumn getPdbStrandId()

PDB strand/chain id.

Returns:

StrColumn

getNdbSeqNum

public StrColumn getNdbSeqNum()

NDB/RCSB residue number.

Returns:

StrColumn

getPdbSeqNum

public StrColumn getPdbSeqNum()

PDB residue number.

Returns:

StrColumn

getAuthSeqNum

public StrColumn getAuthSeqNum()

Author provided residue numbering. This value may differ from the PDB residue number and may not correspond to residue numbering within the coordinate records.

Returns:

StrColumn

getPdbMonId

public StrColumn getPdbMonId()

PDB residue identifier.

Returns:

StrColumn

getAuthMonId

public StrColumn getAuthMonId()

Author provided residue identifier. This value may differ from the PDB residue identifier and may not correspond to residue identification within the coordinate records.

Returns:

StrColumn

getPdbInsCode

public StrColumn getPdbInsCode()

PDB insertion code.

Returns:

StrColumn