Package org.rcsb.cif.schema.mm

Class PdbxPolySeqScheme

java.lang.Object

org.rcsb.cif.schema.DelegatingCategory

org.rcsb.cif.schema.mm.PdbxPolySeqScheme

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class PdbxPolySeqScheme
extends DelegatingCategory

The PDBX_POLY_SEQ_SCHEME category provides residue level nomenclature mapping for polymer entities.

Nested Class Summary

Nested classes/interfaces inherited from class org.rcsb.cif.schema.DelegatingCategory

DelegatingCategory.DelegatingCifCoreCategory

Nested classes/interfaces inherited from interface org.rcsb.cif.model.Category

Category.EmptyCategory

Field Summary

Fields inherited from class org.rcsb.cif.schema.DelegatingCategory

delegate

Constructor Summary

Constructors

Constructor	Description
PdbxPolySeqScheme(Category delegate)

Method Summary

Modifier and Type	Method	Description
protected Column	createDelegate(String columnName, Column column)
StrColumn	getAsymId()	Pointer to _atom_site.label_asym_id.
StrColumn	getAuthMonId()	Author provided residue identifier.
StrColumn	getAuthSeqNum()	Author provided residue number.
StrColumn	getEntityId()	Pointer to _entity.id.
StrColumn	getHetero()	Pointer to _entity_poly_seq.hetero
StrColumn	getMonId()	Pointer to _entity_poly_seq.mon_id.
IntColumn	getNdbSeqNum()	NDB residue number.
StrColumn	getPdbInsCode()	PDB insertion code.
StrColumn	getPdbMonId()	PDB residue identifier.
StrColumn	getPdbSeqNum()	PDB residue number.
StrColumn	getPdbStrandId()	PDB strand/chain id.
IntColumn	getSeqId()	Pointer to _entity_poly_seq.num

Methods inherited from class org.rcsb.cif.schema.DelegatingCategory

getCategoryName, getColumn, getColumns, getRowCount

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columns, getColumn, isDefined

Constructor Details

PdbxPolySeqScheme

public PdbxPolySeqScheme(Category delegate)

Method Details

createDelegate

protected Column createDelegate(String columnName, Column column)

Overrides:

createDelegate in class DelegatingCategory

getAsymId

public StrColumn getAsymId()

Pointer to _atom_site.label_asym_id.

Returns:

StrColumn

getEntityId

public StrColumn getEntityId()

Pointer to _entity.id.

Returns:

StrColumn

getSeqId

public IntColumn getSeqId()

Pointer to _entity_poly_seq.num

Returns:

IntColumn

getHetero

public StrColumn getHetero()

Pointer to _entity_poly_seq.hetero

Returns:

StrColumn

getMonId

public StrColumn getMonId()

Pointer to _entity_poly_seq.mon_id.

Returns:

StrColumn

getPdbStrandId

public StrColumn getPdbStrandId()

PDB strand/chain id.

Returns:

StrColumn

getNdbSeqNum

public IntColumn getNdbSeqNum()

NDB residue number.

Returns:

IntColumn

getPdbSeqNum

public StrColumn getPdbSeqNum()

PDB residue number.

Returns:

StrColumn

getAuthSeqNum

public StrColumn getAuthSeqNum()

Author provided residue number. This value may differ from the PDB residue number and may not correspond to residue numbering within the coordinate records.

Returns:

StrColumn

getPdbMonId

public StrColumn getPdbMonId()

PDB residue identifier.

Returns:

StrColumn

getAuthMonId

public StrColumn getAuthMonId()

Author provided residue identifier. This value may differ from the PDB residue identifier and may not correspond to residue identifier within the coordinate records.

Returns:

StrColumn

getPdbInsCode

public StrColumn getPdbInsCode()

PDB insertion code.

Returns:

StrColumn