Package org.rcsb.cif.schema.mm

Class PdbxReferenceEntityLink

java.lang.Object
org.rcsb.cif.schema.DelegatingCategory
org.rcsb.cif.schema.mm.PdbxReferenceEntityLink
All Implemented Interfaces:
Category
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class PdbxReferenceEntityLink
extends DelegatingCategory
Data items in the PDBX_REFERENCE_ENTITY_LINK category give details about the linkages between entities within reference molecules.

  • Constructor Details

  • Method Details

    • createDelegate

      protected Column createDelegate​(String columnName, Column column)
      Overrides:
      createDelegate in class DelegatingCategory

    • getLinkId

      public IntColumn getLinkId()
      The value of _pdbx_reference_entity_link.link_id uniquely identifies linkages between entities with a molecule.
      Returns:
      IntColumn

    • getPrdId

      public StrColumn getPrdId()
      The value of _pdbx_reference_entity_link.prd_id is a reference _pdbx_reference_entity_list.prd_id in the PDBX_REFERENCE_ENTITY_LIST category.
      Returns:
      StrColumn

    • getDetails

      public StrColumn getDetails()
      A description of special aspects of a linkage between chemical components in the structure.
      Returns:
      StrColumn

    • getRefEntityId1

      public StrColumn getRefEntityId1()
      The reference entity id of the first of the two entities joined by the linkage. This data item is a pointer to _pdbx_reference_entity_list.ref_entity_id in the PDBX_REFERENCE_ENTITY_LIST category.
      Returns:
      StrColumn

    • getRefEntityId2

      public StrColumn getRefEntityId2()
      The reference entity id of the second of the two entities joined by the linkage. This data item is a pointer to _pdbx_reference_entity_list.ref_entity_id in the PDBX_REFERENCE_ENTITY_LIST category.
      Returns:
      StrColumn

    • getEntitySeqNum1

      public IntColumn getEntitySeqNum1()
      For a polymer entity, the sequence number in the first of the two entities containing the linkage. This data item is a pointer to _pdbx_reference_entity_poly_seq.num in the PDBX_REFERENCE_ENTITY_POLY_SEQ category.
      Returns:
      IntColumn

    • getEntitySeqNum2

      public IntColumn getEntitySeqNum2()
      For a polymer entity, the sequence number in the second of the two entities containing the linkage. This data item is a pointer to _pdbx_reference_entity_poly_seq.num in the PDBX_REFERENCE_ENTITY_POLY_SEQ category.
      Returns:
      IntColumn

    • getCompId1

      public StrColumn getCompId1()
      The component identifier in the first of the two entities containing the linkage. For polymer entities, this data item is a pointer to _pdbx_reference_entity_poly_seq.mon_id in the PDBX_REFERENCE_ENTITY_POLY_SEQ category. For non-polymer entities, this data item is a pointer to _pdbx_reference_entity_nonpoly.chem_comp_id in the PDBX_REFERENCE_ENTITY_NONPOLY category.
      Returns:
      StrColumn

    • getCompId2

      public StrColumn getCompId2()
      The component identifier in the second of the two entities containing the linkage. For polymer entities, this data item is a pointer to _pdbx_reference_entity_poly_seq.mon_id in the PDBX_REFERENCE_ENTITY_POLY_SEQ category. For non-polymer entities, this data item is a pointer to _pdbx_reference_entity_nonpoly.chem_comp_id in the PDBX_REFERENCE_ENTITY_NONPOLY category.
      Returns:
      StrColumn

    • getAtomId1

      public StrColumn getAtomId1()
      The atom identifier/name in the first of the two entities containing the linkage.
      Returns:
      StrColumn

    • getAtomId2

      public StrColumn getAtomId2()
      The atom identifier/name in the second of the two entities containing the linkage.
      Returns:
      StrColumn

    • getValueOrder

      public StrColumn getValueOrder()
      The bond order target for the chemical linkage.
      Returns:
      StrColumn

    • getComponent1

      public IntColumn getComponent1()
      The entity component identifier for the first of two entities containing the linkage.
      Returns:
      IntColumn

    • getComponent2

      public IntColumn getComponent2()
      The entity component identifier for the second of two entities containing the linkage.
      Returns:
      IntColumn

    • getNonpolyResNum1

      public StrColumn getNonpolyResNum1()
      The residue number for the first of two entities containing the linkage.
      Returns:
      StrColumn

    • getNonpolyResNum2

      public StrColumn getNonpolyResNum2()
      The residue number for the second of two entities containing the linkage.
      Returns:
      StrColumn

    • getLinkClass

      public StrColumn getLinkClass()
      A code indicating the entity types involved in the linkage.
      Returns:
      StrColumn