Package org.rcsb.cif.schema.mm
Class PdbxRefine
java.lang.Object
org.rcsb.cif.schema.DelegatingCategory
org.rcsb.cif.schema.mm.PdbxRefine
- All Implemented Interfaces:
Category
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class PdbxRefine
extends DelegatingCategory
Data items in the PDBX_REFINE category record details about
additional structure refinement parameters which are needed
to complete legacy REMARK 3 refinement templates in PDB
format files.
-
Nested Class Summary
Nested classes/interfaces inherited from class org.rcsb.cif.schema.DelegatingCategory
DelegatingCategory.DelegatingCifCoreCategoryNested classes/interfaces inherited from interface org.rcsb.cif.model.Category
Category.EmptyCategory -
Field Summary
-
Constructor Summary
Constructors Constructor Description PdbxRefine(Category delegate) -
Method Summary
Modifier and Type Method Description protected ColumncreateDelegate(String columnName, Column column)StrColumngetEntryId()This data item is a pointer to _entry.id in the ENTRY category.FloatColumngetFreeRErrorNoCutoff()Free R-value error(no cutoff)FloatColumngetFreeRFactor4sigCutoff()R free value (4 sigma cutoff).FloatColumngetFreeRFactorNoCutoff()Free R-value (no cutoff) Placeholder for PDB mapping of SHELXL refinement data.FloatColumngetFreeRVal4sigCutoff()Free R-value (4 sigma cutoff) Placeholder for PDB mapping of SHELXL refinement data.FloatColumngetFreeRValNoCutoff()Free R-value (no cutoff)FloatColumngetFreeRValTestSetCt4sigCutoff()Free R-value test set count (4 sigma cutoff) Placeholder for PDB mapping of SHELXL refinement data.FloatColumngetFreeRValTestSetCtNoCutoff()Free R-value test set count (no cutoff) Placeholder for PDB mapping of SHELXL refinement data.FloatColumngetFreeRValTestSetSizePerc4sigCutoff()Free R-value test set size (in percent, 4 sigma cutoff) Placeholder for PDB mapping of SHELXL refinement data.FloatColumngetFreeRValTestSetSizePercNoCutoff()Free R-value test set size (in percent, no cutoff) Placeholder for PDB mapping of SHELXL refinement data.FloatColumngetNumberReflnsObs4sigCutoff()Total number of reflections (4 sigma cutoff).FloatColumngetNumberReflnsObsNoCutoff()Total number of reflections (no cutoff).StrColumngetPdbxRefineId()This data item uniquely identifies a refinement within an entry.FloatColumngetRFactorAll4sigCutoff()R-value (all reflections, 4 sigma cutoff) Placeholder for PDB mapping of SHELXL refinement data.FloatColumngetRFactorAllNoCutoff()R-value (all reflections, no cutoff) Placeholder for PDB mapping of SHELXL refinement data.FloatColumngetRFactorObs4sigCutoff()R-value (working set, 4 sigma cutoff) Placeholder for PDB mapping of SHELXL refinement data.FloatColumngetRFactorObsNoCutoff()R-value (working set reflections, no cutoff) Placeholder for PDB mapping of SHELXL refinement data.Methods inherited from class org.rcsb.cif.schema.DelegatingCategory
getCategoryName, getColumn, getColumns, getRowCount
-
Constructor Details
-
Method Details
-
createDelegate
- Overrides:
createDelegatein classDelegatingCategory
-
getEntryId
This data item is a pointer to _entry.id in the ENTRY category.- Returns:
- StrColumn
-
getPdbxRefineId
This data item uniquely identifies a refinement within an entry. _pdbx_refine.pdbx_refine_id can be used to distinguish the results of joint refinements.- Returns:
- StrColumn
-
getRFactorAllNoCutoff
R-value (all reflections, no cutoff) Placeholder for PDB mapping of SHELXL refinement data.- Returns:
- FloatColumn
-
getRFactorObsNoCutoff
R-value (working set reflections, no cutoff) Placeholder for PDB mapping of SHELXL refinement data.- Returns:
- FloatColumn
-
getFreeRFactor4sigCutoff
R free value (4 sigma cutoff). Placeholder for PDB mapping of SHELXL refinement data.- Returns:
- FloatColumn
-
getFreeRFactorNoCutoff
Free R-value (no cutoff) Placeholder for PDB mapping of SHELXL refinement data.- Returns:
- FloatColumn
-
getFreeRErrorNoCutoff
Free R-value error(no cutoff)- Returns:
- FloatColumn
-
getFreeRValTestSetSizePercNoCutoff
Free R-value test set size (in percent, no cutoff) Placeholder for PDB mapping of SHELXL refinement data.- Returns:
- FloatColumn
-
getFreeRValTestSetCtNoCutoff
Free R-value test set count (no cutoff) Placeholder for PDB mapping of SHELXL refinement data.- Returns:
- FloatColumn
-
getNumberReflnsObsNoCutoff
Total number of reflections (no cutoff). Placeholder for PDB mapping of SHELXL refinement data.- Returns:
- FloatColumn
-
getRFactorAll4sigCutoff
R-value (all reflections, 4 sigma cutoff) Placeholder for PDB mapping of SHELXL refinement data.- Returns:
- FloatColumn
-
getRFactorObs4sigCutoff
R-value (working set, 4 sigma cutoff) Placeholder for PDB mapping of SHELXL refinement data.- Returns:
- FloatColumn
-
getFreeRVal4sigCutoff
Free R-value (4 sigma cutoff) Placeholder for PDB mapping of SHELXL refinement data.- Returns:
- FloatColumn
-
getFreeRValTestSetSizePerc4sigCutoff
Free R-value test set size (in percent, 4 sigma cutoff) Placeholder for PDB mapping of SHELXL refinement data.- Returns:
- FloatColumn
-
getFreeRValTestSetCt4sigCutoff
Free R-value test set count (4 sigma cutoff) Placeholder for PDB mapping of SHELXL refinement data.- Returns:
- FloatColumn
-
getNumberReflnsObs4sigCutoff
Total number of reflections (4 sigma cutoff). Placeholder for PDB mapping of SHELXL refinement data.- Returns:
- FloatColumn
-
getFreeRValNoCutoff
Free R-value (no cutoff)- Returns:
- FloatColumn
-