Package org.rcsb.cif.schema.mm

Class PdbxRemediationAtomSiteMapping

java.lang.Object
org.rcsb.cif.schema.DelegatingCategory
org.rcsb.cif.schema.mm.PdbxRemediationAtomSiteMapping
All Implemented Interfaces:
Category
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class PdbxRemediationAtomSiteMapping
extends DelegatingCategory
Data items in the PDBX_REMEDIATION_ATOM_SITE_MAPPING category records mapping information between selected molecular entities that have been chemically redefined. The prior and current atom nomenclature is tabulated in this category.

  • Constructor Details

  • Method Details

    • createDelegate

      protected Column createDelegate​(String columnName, Column column)
      Overrides:
      createDelegate in class DelegatingCategory

    • getId

      public StrColumn getId()
      The value of pdbx_remediation_atom_site_mapping.id must uniquely identify a record in the PDBX_REMEDIATION_ATOM_SITE_MAPPING list. Note that this item need not be a number; it can be any unique identifier.
      Returns:
      StrColumn

    • getGroupPDB

      public StrColumn getGroupPDB()
      The PDB group of atoms to which the atom site belongs.
      Returns:
      StrColumn

    • getLabelAltId

      public StrColumn getLabelAltId()
      A component of the atom_site identifier. This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getLabelAsymId

      public StrColumn getLabelAsymId()
      A component of the atom_site identifier. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getLabelAtomId

      public StrColumn getLabelAtomId()
      A component of the atom_site identifier. This data item is a pointer to _atom_site.label_atom_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getLabelCompId

      public StrColumn getLabelCompId()
      A component of the atom_site identifier. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getLabelSeqId

      public IntColumn getLabelSeqId()
      A component of the atom_site identifier. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
      Returns:
      IntColumn

    • getPdbxAlign

      public IntColumn getPdbxAlign()
      An optional alignment flag.
      Returns:
      IntColumn

    • getPDBInsCode

      public StrColumn getPDBInsCode()
      Optional atom_site identifier. This data item is a pointer to _atom_site.pdbx_PDB_ins_code in the ATOM_SITE category.
      Returns:
      StrColumn

    • getPreAuthAsymId

      public StrColumn getPreAuthAsymId()
      A component of the prior atom_site identifier. This data item corresponds to _atom_site.auth_asym_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getPreAuthAtomId

      public StrColumn getPreAuthAtomId()
      A component of the prior atom_site identifier. This data item corrresponds to _atom_site.auth_atom_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getPreAuthCompId

      public StrColumn getPreAuthCompId()
      A component of the prior atom_site identifier. This data item corresponds to _atom_site.auth_comp_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getPreAuthSeqId

      public StrColumn getPreAuthSeqId()
      A component of the prior atom_site identifier. This data item corresponds to _atom_site.auth_seq_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getPrePDBInsCode

      public StrColumn getPrePDBInsCode()
      A component of the prior atom_site identifier. This data item corresponds to _atom_site.pdbx_PDB_ins_code in the ATOM_SITE category.
      Returns:
      StrColumn

    • getPreGroupPDB

      public StrColumn getPreGroupPDB()
      A component of the prior atom_site identifier. This item corresponds to the PDB group of atoms to which the atom site belongs.
      Returns:
      StrColumn

    • getPreAuthAltId

      public StrColumn getPreAuthAltId()
      A component of the prior atom_site identifier. This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getPrePdbxAlign

      public IntColumn getPrePdbxAlign()
      An optional alignment flag.
      Returns:
      IntColumn

    • getAuthAsymId

      public StrColumn getAuthAsymId()
      A component of the current atom_site identifier. This data item corresponds to _atom_site.auth_asym_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAuthAtomId

      public StrColumn getAuthAtomId()
      A component of the current atom_site identifier. This data item corrresponds to _atom_site.auth_atom_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAuthCompId

      public StrColumn getAuthCompId()
      A component of the current atom_site identifier. This data item corresponds to _atom_site.auth_comp_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAuthSeqId

      public StrColumn getAuthSeqId()
      A component of the current atom_site identifier. This data item corresponds to _atom_site.auth_seq_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAuthAltId

      public StrColumn getAuthAltId()
      A component of the current atom_site identifier labeling alternate locations.
      Returns:
      StrColumn

    • getOccupancy

      public FloatColumn getOccupancy()
      The fraction of the atom type present at the current atom site.
      Returns:
      FloatColumn

    • getPreOccupancy

      public FloatColumn getPreOccupancy()
      The fraction of the atom type present for the prior atom site.
      Returns:
      FloatColumn