Package org.rcsb.cif.schema.mm

Class PdbxRmsDevsCovalent

java.lang.Object
org.rcsb.cif.schema.DelegatingCategory
org.rcsb.cif.schema.mm.PdbxRmsDevsCovalent
All Implemented Interfaces:
Category
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class PdbxRmsDevsCovalent
extends DelegatingCategory
Data items in the PDBX_RMS_DEVS_COVALENT record the summary RMS deviations for nucleic acid covalent geometry relative to small molecule crystal standards.

  • Constructor Details

  • Method Details

    • createDelegate

      protected Column createDelegate​(String columnName, Column column)
      Overrides:
      createDelegate in class DelegatingCategory

    • getEntryId

      public StrColumn getEntryId()
      Pointer to the entry id.
      Returns:
      StrColumn

    • getRmsBonds

      public FloatColumn getRmsBonds()
      Total RMS deviation for all bonds in entry relative to small molecule crystal standards.
      Returns:
      FloatColumn

    • getNumBonds

      public IntColumn getNumBonds()
      Total number of bonds in calculation of _pdbx_rms_devs_covalent.rms_bonds.
      Returns:
      IntColumn

    • getRmsBondsBase

      public FloatColumn getRmsBondsBase()
      Total RMS deviation for all base bonds in entry relative to small molecule crystal standards.
      Returns:
      FloatColumn

    • getNumBondsBase

      public IntColumn getNumBondsBase()
      Total number of base bonds in calculation of _pdbx_rms_devs_covalent.rms_bonds_base.
      Returns:
      IntColumn

    • getRmsBondsSugar

      public FloatColumn getRmsBondsSugar()
      Total RMS deviation for all sugar bonds in entry relative to small molecule crystal standards.
      Returns:
      FloatColumn

    • getNumBondsSugar

      public IntColumn getNumBondsSugar()
      Total number of sugar bonds in calculation of _pdbx_rms_devs_covalent.rms_bonds_sugar.
      Returns:
      IntColumn

    • getRmsBondsPhosphate

      public FloatColumn getRmsBondsPhosphate()
      Total RMS deviation for all phosphate bonds in entry relative to small molecule crystal standards.
      Returns:
      FloatColumn

    • getNumBondsPhosphate

      public IntColumn getNumBondsPhosphate()
      Total number of sugar bonds in calculation of _pdbx_rms_devs_covalent.rms_bonds_phosphate.
      Returns:
      IntColumn

    • getRmsAngles

      public FloatColumn getRmsAngles()
      Total RMS deviation for all angles in entry relative to small molecule crystal standards.
      Returns:
      FloatColumn

    • getNumAngles

      public IntColumn getNumAngles()
      Total number of angles in calculation of _pdbx_rms_devs_covalent.rms_angles.
      Returns:
      IntColumn

    • getRmsAnglesBase

      public FloatColumn getRmsAnglesBase()
      Total RMS deviation for all base angles in entry relative to small molecule crystal standards.
      Returns:
      FloatColumn

    • getNumAnglesBase

      public IntColumn getNumAnglesBase()
      Total number of base angles in calculation of _pdbx_rms_devs_covalent.rms_angles_base.
      Returns:
      IntColumn

    • getRmsAnglesSugar

      public FloatColumn getRmsAnglesSugar()
      Total RMS deviation for all sugar angles in entry relative to small molecule crystal standards.
      Returns:
      FloatColumn

    • getNumAnglesSugar

      public IntColumn getNumAnglesSugar()
      Total number of sugar angles in calculation of _pdbx_rms_devs_covalent.rms_angles_sugar.
      Returns:
      IntColumn

    • getRmsAnglesPhosphate

      public FloatColumn getRmsAnglesPhosphate()
      Total RMS deviation for all phosphate angles in entry relative to small molecule crystal standards.
      Returns:
      FloatColumn

    • getNumAnglesPhosphate

      public IntColumn getNumAnglesPhosphate()
      Total number of sugar angles in calculation of _pdbx_rms_devs_covalent.rms_angles_phosphate.
      Returns:
      IntColumn