org.rcsb.cif.schema.mm.PdbxSequencePattern

@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class PdbxSequencePattern
extends DelegatingCategory

Data items in the PDBX_SEQUENCE_PATTERN category record the number of occurences of common step sequence patterns (e.g. AA, CG, AT).

Nested Class Summary

Nested classes/interfaces inherited from class org.rcsb.cif.schema.DelegatingCategory
DelegatingCategory.DelegatingCifCoreCategory

Nested classes/interfaces inherited from interface org.rcsb.cif.model.Category
Category.EmptyCategory
Field Summary

Fields inherited from class org.rcsb.cif.schema.DelegatingCategory
delegate
Constructor Summary

Constructors

Constructor Description

PdbxSequencePattern(Category delegate)

Method Summary

Modifier and Type	Method	Description
`protected Column`	`createDelegate(String columnName, Column column)`
`StrColumn`	`getAuthAsymId()`	The identifier of the author asym_id of the strand containing the sequence pattern.
`StrColumn`	`getLabelAsymId()`	The identifier of the asym_id of the strand containing the sequence pattern.
`IntColumn`	`getPatternCount()`	Number of occurences of the sequence pattern within the named strand.
`StrColumn`	`getSequencePattern()`	Sequence singlet or doublet.

getCategoryName, getColumn, getColumns, getRowCount

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

columns, getColumn, isDefined

Constructor Details
- PdbxSequencePattern
  
  public PdbxSequencePattern(Category delegate)
Method Details
- createDelegate
  
  protected Column createDelegate(String columnName, Column column)
  
  Overrides:
  
  createDelegate in class DelegatingCategory
- getLabelAsymId
  
  public StrColumn getLabelAsymId()
  
  The identifier of the asym_id of the strand containing the sequence pattern. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.
  
  Returns:
  
  StrColumn
- getAuthAsymId
  
  public StrColumn getAuthAsymId()
  
  The identifier of the author asym_id of the strand containing the sequence pattern. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
  
  Returns:
  
  StrColumn
- getPatternCount
  
  public IntColumn getPatternCount()
  
  Number of occurences of the sequence pattern within the named strand.
  
  Returns:
  
  IntColumn
- getSequencePattern
  
  public StrColumn getSequencePattern()
  
  Sequence singlet or doublet.
  
  Returns:
  
  StrColumn

Class PdbxSequencePattern