Package org.rcsb.cif.schema.mm

Class PdbxStereochemistry

java.lang.Object
org.rcsb.cif.schema.DelegatingCategory
org.rcsb.cif.schema.mm.PdbxStereochemistry
All Implemented Interfaces:
Category
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class PdbxStereochemistry
extends DelegatingCategory
Data items in the PDBX_STEREOCHEMISTRY identify chiral centers and associated chiral volumes.

  • Constructor Details

  • Method Details

    • createDelegate

      protected Column createDelegate​(String columnName, Column column)
      Overrides:
      createDelegate in class DelegatingCategory

    • getId

      public IntColumn getId()
      The value of _pdbx_stereochemistry.id must uniquely identify each item in the PDBX_STEREOCHEMISTRY list. This is an integer serial number.
      Returns:
      IntColumn

    • getModelId

      public IntColumn getModelId()
      The model number for the given angle
      Returns:
      IntColumn

    • getAuthAsymId

      public StrColumn getAuthAsymId()
      This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getLabelAsymId

      public StrColumn getLabelAsymId()
      This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getLabelCompId

      public StrColumn getLabelCompId()
      This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAuthSeqId

      public StrColumn getAuthSeqId()
      This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getLabelSeqId

      public IntColumn getLabelSeqId()
      This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
      Returns:
      IntColumn

    • getLabelAtomId

      public StrColumn getLabelAtomId()
      This data item is a pointer to _atom_site.label_atom_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getLabelAltId

      public StrColumn getLabelAltId()
      This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getLabelAtomIdU

      public StrColumn getLabelAtomIdU()
      Stereochemically related atom U. This data item is a pointer to _atom_site.label_atom_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getLabelAltIdU

      public StrColumn getLabelAltIdU()
      Alt_id for stereochemically related atom U. This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getLabelAtomIdV

      public StrColumn getLabelAtomIdV()
      Stereochemically related atom V. This data item is a pointer to _atom_site.label_atom_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getLabelAltIdV

      public StrColumn getLabelAltIdV()
      Alt_id for stereochemically related atom V. This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getLabelAtomIdW

      public StrColumn getLabelAtomIdW()
      Stereochemically related atom W. This data item is a pointer to _atom_site.label_atom_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getLabelAltIdW

      public StrColumn getLabelAltIdW()
      Alt_id for stereochemically related atom W. This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getVolume3

      public FloatColumn getVolume3()
      Chiral volume in degrees. (U x V) * W
      Returns:
      FloatColumn

    • getAngleOutOfPlane

      public FloatColumn getAngleOutOfPlane()
      Out-of-plane angle for neighbor W
      Returns:
      FloatColumn