Package org.rcsb.cif.schema.mm

Class PdbxStructAssemblyGen

java.lang.Object

org.rcsb.cif.schema.DelegatingCategory

org.rcsb.cif.schema.mm.PdbxStructAssemblyGen

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class PdbxStructAssemblyGen
extends DelegatingCategory

Data items in the PDBX_STRUCT_ASSEMBLY_GEN category record details about the generation of each macromolecular assemblies. The PDBX_STRUCT_ASSEMBLY_GEN data items provide the specifications of the components that constitute that assembly in terms of cartesian transformations.

Nested Class Summary

Nested classes/interfaces inherited from class org.rcsb.cif.schema.DelegatingCategory

DelegatingCategory.DelegatingCifCoreCategory

Nested classes/interfaces inherited from interface org.rcsb.cif.model.Category

Category.EmptyCategory

Field Summary

Fields inherited from class org.rcsb.cif.schema.DelegatingCategory

delegate

Constructor Summary

Constructors

Constructor	Description
PdbxStructAssemblyGen(Category delegate)

Method Summary

Modifier and Type	Method	Description
protected Column	createDelegate(String columnName, Column column)
StrColumn	getAssemblyId()	This data item is a pointer to _pdbx_struct_assembly.id in the PDBX_STRUCT_ASSEMBLY category.
StrColumn	getAsymIdList()	This data item is a pointer to _struct_asym.id in the STRUCT_ASYM category.
StrColumn	getAuthAsymIdList()	This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
StrColumn	getEntityInstId()	This data item is a pointer to _pdbx_struct_entity_inst.id in the PDBX_STRUCT_ENTITY_INST category.
StrColumn	getOperExpression()	Identifies the operation of collection of operations from category PDBX_STRUCT_OPER_LIST.

Methods inherited from class org.rcsb.cif.schema.DelegatingCategory

getCategoryName, getColumn, getColumns, getRowCount

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columns, getColumn, isDefined

Constructor Details

PdbxStructAssemblyGen

public PdbxStructAssemblyGen(Category delegate)

Method Details

createDelegate

protected Column createDelegate(String columnName, Column column)

Overrides:

createDelegate in class DelegatingCategory

getEntityInstId

public StrColumn getEntityInstId()

This data item is a pointer to _pdbx_struct_entity_inst.id in the PDBX_STRUCT_ENTITY_INST category. This item may be expressed as a comma separated list of instance identifiers.

Returns:

StrColumn

getAsymIdList

public StrColumn getAsymIdList()

This data item is a pointer to _struct_asym.id in the STRUCT_ASYM category. This item may be expressed as a comma separated list of identifiers.

Returns:

StrColumn

getAuthAsymIdList

public StrColumn getAuthAsymIdList()

This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category. This item may be expressed as a comma separated list of identifiers.

Returns:

StrColumn

getAssemblyId

public StrColumn getAssemblyId()

This data item is a pointer to _pdbx_struct_assembly.id in the PDBX_STRUCT_ASSEMBLY category.

Returns:

StrColumn

getOperExpression

public StrColumn getOperExpression()

Identifies the operation of collection of operations from category PDBX_STRUCT_OPER_LIST. Operation expressions may have the forms: (1) the single operation 1 (1,2,5) the operations 1, 2, 5 (1-4) the operations 1,2,3 and 4 (1,2)(3,4) the combinations of operations 3 and 4 followed by 1 and 2 (i.e. the cartesian product of parenthetical groups applied from right to left)

Returns:

StrColumn