Package org.rcsb.cif.schema.mm

Class PdbxStructAssemblyGenDepositorInfo

java.lang.Object
org.rcsb.cif.schema.DelegatingCategory
org.rcsb.cif.schema.mm.PdbxStructAssemblyGenDepositorInfo
All Implemented Interfaces:
Category
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class PdbxStructAssemblyGenDepositorInfo
extends DelegatingCategory
Data items in the PDBX_STRUCT_ASSEMBLY_GEN_DEPOSITOR_INFO category capture depositor provided information related to the archival cateogory PDBX_STRUCT_ASSEMBLY_GEN.

  • Constructor Details

  • Method Details

    • createDelegate

      protected Column createDelegate​(String columnName, Column column)
      Overrides:
      createDelegate in class DelegatingCategory

    • getId

      public StrColumn getId()
      The value of _pdbx_struct_assembly_gen_depositor_info.id must uniquely identify a record in the PDBX_STRUCT_ASSEMBLY_GEN_DEPOSITOR_INFO list.
      Returns:
      StrColumn

    • getAsymIdList

      public StrColumn getAsymIdList()
      This data item is a pointer to _struct_asym.id in the STRUCT_ASYM category. This item may be expressed as a comma separated list of identifiers.
      Returns:
      StrColumn

    • getAssemblyId

      public StrColumn getAssemblyId()
      This data item is a pointer to _pdbx_struct_assembly.id in the PDBX_STRUCT_ASSEMBLY category.
      Returns:
      StrColumn

    • getOperExpression

      public StrColumn getOperExpression()
      Identifies the operation of collection of operations from category PDBX_STRUCT_OPER_LIST. Operation expressions may have the forms: (1) the single operation 1 (1,2,5) the operations 1, 2, 5 (1-4) the operations 1,2,3 and 4 (1,2)(3,4) the combinations of operations 3 and 4 followed by 1 and 2 (i.e. the cartesian product of parenthetical groups applied from right to left)
      Returns:
      StrColumn

    • getFullMatrices

      public StrColumn getFullMatrices()
      Transformation matrix as provided by depositor
      Returns:
      StrColumn

    • getSymmetryOperation

      public StrColumn getSymmetryOperation()
      This item expresses the transformation on an X, Y and Z basis.
      Returns:
      StrColumn

    • getAtUnitMatrix

      public StrColumn getAtUnitMatrix()
      Flag indicating unit matrix
      Returns:
      StrColumn

    • getChainIdList

      public StrColumn getChainIdList()
      This data item is the author provided chain names for the assembly This item may be expressed as a comma separated list of identifiers.
      Returns:
      StrColumn

    • getAllChains

      public StrColumn getAllChains()
      Flag indicating that all polymer chains are used in the assembly
      Returns:
      StrColumn

    • getHelicalRotation

      public FloatColumn getHelicalRotation()
      Angular rotation (degrees) along the helical axis
      Returns:
      FloatColumn

    • getHelicalRise

      public FloatColumn getHelicalRise()
      The axial rise per subunit in the helical assembly.
      Returns:
      FloatColumn