Package org.rcsb.cif.schema.mm

Class PdbxStructRefSeqDeletion

java.lang.Object

org.rcsb.cif.schema.DelegatingCategory

org.rcsb.cif.schema.mm.PdbxStructRefSeqDeletion

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class PdbxStructRefSeqDeletion
extends DelegatingCategory

Data items in the PDBX_STRUCT_REF_SEQ_INSERTION category annotate deletions in the sequence of the entity described in the referenced database entry.

Nested Class Summary

Nested classes/interfaces inherited from class org.rcsb.cif.schema.DelegatingCategory

DelegatingCategory.DelegatingCifCoreCategory

Nested classes/interfaces inherited from interface org.rcsb.cif.model.Category

Category.EmptyCategory

Field Summary

Fields inherited from class org.rcsb.cif.schema.DelegatingCategory

delegate

Constructor Summary

Constructors

Constructor	Description
PdbxStructRefSeqDeletion(Category delegate)

Method Summary

Modifier and Type	Method	Description
protected Column	createDelegate(String columnName, Column column)
StrColumn	getAsymId()	Identifies the polymer entity instance in this entry corresponding to the reference sequence in which the deletion is specified.
StrColumn	getCompId()	The monomer name found at this position in the referenced database entry.
StrColumn	getDbCode()	The code for this entity or biological unit or for a closely related entity or biological unit in the named database.
StrColumn	getDbName()	The name of the database containing reference information about this entity or biological unit.
IntColumn	getDbSeqId()	This data item is the database sequence numbering of the deleted residue
StrColumn	getDetails()	A description of any special aspects of the deletion
StrColumn	getId()	The value of _pdbx_struct_ref_seq_deletion.id must uniquely identify a record in the PDBX_STRUCT_REF_SEQ_DELETION list.

Methods inherited from class org.rcsb.cif.schema.DelegatingCategory

getCategoryName, getColumn, getColumns, getRowCount

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columns, getColumn, isDefined

Constructor Details

PdbxStructRefSeqDeletion

public PdbxStructRefSeqDeletion(Category delegate)

Method Details

createDelegate

protected Column createDelegate(String columnName, Column column)

Overrides:

createDelegate in class DelegatingCategory

getId

public StrColumn getId()

The value of _pdbx_struct_ref_seq_deletion.id must uniquely identify a record in the PDBX_STRUCT_REF_SEQ_DELETION list.

Returns:

StrColumn

getDetails

public StrColumn getDetails()

A description of any special aspects of the deletion

Returns:

StrColumn

getAsymId

public StrColumn getAsymId()

Identifies the polymer entity instance in this entry corresponding to the reference sequence in which the deletion is specified. This data item is a pointer to _pdbx_poly_seq_scheme.asym_id in the PDBX_POLY_SEQ_SCHEME category.

Returns:

StrColumn

getCompId

public StrColumn getCompId()

The monomer name found at this position in the referenced database entry.

Returns:

StrColumn

getDbSeqId

public IntColumn getDbSeqId()

This data item is the database sequence numbering of the deleted residue

Returns:

IntColumn

getDbCode

public StrColumn getDbCode()

The code for this entity or biological unit or for a closely related entity or biological unit in the named database.

Returns:

StrColumn

getDbName

public StrColumn getDbName()

The name of the database containing reference information about this entity or biological unit.

Returns:

StrColumn