Package org.rcsb.cif.schema.mm

Class PdbxStructRefSeqDepositorInfo

java.lang.Object
org.rcsb.cif.schema.DelegatingCategory
org.rcsb.cif.schema.mm.PdbxStructRefSeqDepositorInfo
All Implemented Interfaces:
Category
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class PdbxStructRefSeqDepositorInfo
extends DelegatingCategory
Data items in the PDBX_STRUCT_REF_SEQ_DEPOSITOR_INFO category capture depositor provided information related to the archival cateogory STRUCT_REF_SEQ.

  • Constructor Details

  • Method Details

    • createDelegate

      protected Column createDelegate​(String columnName, Column column)
      Overrides:
      createDelegate in class DelegatingCategory

    • getRefId

      public StrColumn getRefId()
      This data item is a unique identifier for reference sequence information.
      Returns:
      StrColumn

    • getEntityId

      public StrColumn getEntityId()
      This data item is a pointer to _entity.id in the ENTITY category.
      Returns:
      StrColumn

    • getDbAlignBeg

      public IntColumn getDbAlignBeg()
      The sequence position in the referenced database entry at which the alignment begins.
      Returns:
      IntColumn

    • getDbAlignEnd

      public IntColumn getDbAlignEnd()
      The sequence position in the referenced database entry at which the alignment ends.
      Returns:
      IntColumn

    • getDetails

      public StrColumn getDetails()
      A description of special aspects of the sequence alignment.
      Returns:
      StrColumn

    • getDbAccession

      public StrColumn getDbAccession()
      Accession code of the reference database.
      Returns:
      StrColumn

    • getDbCode

      public StrColumn getDbCode()
      The code for this entity or biological unit or for a closely related entity or biological unit in the named database.
      Returns:
      StrColumn

    • getDbName

      public StrColumn getDbName()
      The name of the database containing reference information about this entity or biological unit.
      Returns:
      StrColumn

    • getDbSeqOneLetterCode

      public StrColumn getDbSeqOneLetterCode()
      Database chemical sequence expressed as string of one-letter residue codes.
      Returns:
      StrColumn

    • getSeqAlignBegin

      public StrColumn getSeqAlignBegin()
      Beginning index in the author provided chemical sequence.
      Returns:
      StrColumn

    • getSeqAlignEnd

      public StrColumn getSeqAlignEnd()
      Ending index in the author provided chemical sequence.
      Returns:
      StrColumn