Package org.rcsb.cif.schema.mm

Class PdbxSugarPhosphateGeometry

java.lang.Object
org.rcsb.cif.schema.DelegatingCategory
org.rcsb.cif.schema.mm.PdbxSugarPhosphateGeometry
All Implemented Interfaces:
Category
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class PdbxSugarPhosphateGeometry
extends DelegatingCategory
Data items in the PDBX_SUGAR_PHOSPHATE_GEOMETRY record the RMS deviations covalent geometry for each momoner relative to small molecule crystal standards.

  • Constructor Details

  • Method Details

    • createDelegate

      protected Column createDelegate​(String columnName, Column column)
      Overrides:
      createDelegate in class DelegatingCategory

    • getId

      public IntColumn getId()
      The value of _pdbx_sugar_phosphate_geometry.id must uniquely identify each item in the PDBX_SUGAR_PHOSPHATE_GEOMETRY list. This is an integer serial number.
      Returns:
      IntColumn

    • getModelId

      public IntColumn getModelId()
      The model number
      Returns:
      IntColumn

    • getAuthAsymId

      public StrColumn getAuthAsymId()
      This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getLabelAsymId

      public StrColumn getLabelAsymId()
      This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getLabelCompId

      public StrColumn getLabelCompId()
      This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAuthSeqId

      public StrColumn getAuthSeqId()
      This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getLabelSeqId

      public IntColumn getLabelSeqId()
      This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
      Returns:
      IntColumn

    • getNeighborCompId5prime

      public StrColumn getNeighborCompId5prime()
      Neighbor component in the 5' direction. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getNeighborCompId3prime

      public StrColumn getNeighborCompId3prime()
      Neighbor component in the 3' direction. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getO3PO5C5

      public FloatColumn getO3PO5C5()
      The o3_p_o5_c5 covalent element of this monomer.
      Returns:
      FloatColumn

    • getPO5C5C4

      public FloatColumn getPO5C5C4()
      The p_o5_c5_c4 covalent element of this monomer.
      Returns:
      FloatColumn

    • getO5C5C4C3

      public FloatColumn getO5C5C4C3()
      The o5_c5_c4_c3 covalent element of this monomer.
      Returns:
      FloatColumn

    • getC5C4C3O3

      public FloatColumn getC5C4C3O3()
      The c5_c4_c3_o3 covalent element of this monomer.
      Returns:
      FloatColumn

    • getC4C3O3P

      public FloatColumn getC4C3O3P()
      The c4_c3_o3_p covalent element of this monomer.
      Returns:
      FloatColumn

    • getC3O3PO5

      public FloatColumn getC3O3PO5()
      The c3_o3_p_o5 covalent element of this monomer.
      Returns:
      FloatColumn

    • getC4O4C1N19

      public FloatColumn getC4O4C1N19()
      The c4_o4_c1_n1_9 covalent element of this monomer.
      Returns:
      FloatColumn

    • getO4C1N19C24

      public FloatColumn getO4C1N19C24()
      The o4_c1_n1_9_c2_4 covalent element of this monomer.
      Returns:
      FloatColumn

    • getO4C1N19C68

      public FloatColumn getO4C1N19C68()
      The o4_c1_n1_9_c6_8 covalent element of this monomer.
      Returns:
      FloatColumn

    • getC4O4C1C2

      public FloatColumn getC4O4C1C2()
      The c4_o4_c1_c2 covalent element of this monomer.
      Returns:
      FloatColumn

    • getO4C1C2C3

      public FloatColumn getO4C1C2C3()
      The o4_c1_c2_c3 covalent element of this monomer.
      Returns:
      FloatColumn

    • getC1C2C3C4

      public FloatColumn getC1C2C3C4()
      The c1_c2_c3_c4 covalent element of this monomer.
      Returns:
      FloatColumn

    • getC2C3C4O4

      public FloatColumn getC2C3C4O4()
      The c2_c3_c4_o4 covalent element of this monomer.
      Returns:
      FloatColumn

    • getC3C4O4C1

      public FloatColumn getC3C4O4C1()
      The c3_c4_o4_c1 covalent element of this monomer.
      Returns:
      FloatColumn

    • getC5C4C3C2

      public FloatColumn getC5C4C3C2()
      The c5_c4_c3_c2 covalent element of this monomer.
      Returns:
      FloatColumn

    • getO4C4C3O3

      public FloatColumn getO4C4C3O3()
      The o4_c4_c3_o3 covalent element of this monomer.
      Returns:
      FloatColumn

    • getO3C3C2O2

      public FloatColumn getO3C3C2O2()
      The o3_c3_c2_o2 covalent element of this monomer.
      Returns:
      FloatColumn

    • getO5C5C4O4

      public FloatColumn getO5C5C4O4()
      The o5_c5_c4_o4 covalent element of this monomer.
      Returns:
      FloatColumn

    • getPseudorot

      public FloatColumn getPseudorot()
      The pseudo rotation angle of this monomer.
      Returns:
      FloatColumn

    • getMaxtorsion

      public FloatColumn getMaxtorsion()
      The maximum torsion value sigma-m, c1_c2_c3_c4/cos(P) of this monomer.
      Returns:
      FloatColumn

    • getNextLabelCompId

      public StrColumn getNextLabelCompId()
      The next_label_comp_id covalent element of this monomer.
      Returns:
      StrColumn

    • getNextLabelSeqId

      public IntColumn getNextLabelSeqId()
      The next_label_seq_id covalent element of this monomer.
      Returns:
      IntColumn

    • getNextO3PO5C5

      public FloatColumn getNextO3PO5C5()
      The next_o3_p_o5_c5 covalent element of this monomer.
      Returns:
      FloatColumn

    • getNextPO5C5C4

      public FloatColumn getNextPO5C5C4()
      The next_p_o5_c5_c4 covalent element of this monomer.
      Returns:
      FloatColumn

    • getNextO5C5C4C3

      public FloatColumn getNextO5C5C4C3()
      The next_o5_c5_c4_c3 covalent element of this monomer.
      Returns:
      FloatColumn

    • getNextC5C4C3O3

      public FloatColumn getNextC5C4C3O3()
      The next_c5_c4_c3_o3 covalent element of this monomer.
      Returns:
      FloatColumn

    • getNextC4C3O3P

      public FloatColumn getNextC4C3O3P()
      The next_c4_c3_o3_p covalent element of this monomer.
      Returns:
      FloatColumn

    • getNextC3O3PO5

      public FloatColumn getNextC3O3PO5()
      The next_c3_o3_p_o5 covalent element of this monomer.
      Returns:
      FloatColumn

    • getNextC4O4C1N19

      public FloatColumn getNextC4O4C1N19()
      The next_c4_o4_c1_n1_9 covalent element of this monomer.
      Returns:
      FloatColumn

    • getNextO4C1N19C24

      public FloatColumn getNextO4C1N19C24()
      The next_o4_c1_n1_9_c2_4 covalent element of this monomer.
      Returns:
      FloatColumn

    • getC1C2

      public FloatColumn getC1C2()
      The c1_c2 covalent element of this monomer.
      Returns:
      FloatColumn

    • getC2C3

      public FloatColumn getC2C3()
      The c2_c3 covalent element of this monomer.
      Returns:
      FloatColumn

    • getC3C4

      public FloatColumn getC3C4()
      The c3_c4 covalent element of this monomer.
      Returns:
      FloatColumn

    • getC4O4

      public FloatColumn getC4O4()
      The c4_o4 covalent element of this monomer.
      Returns:
      FloatColumn

    • getO4C1

      public FloatColumn getO4C1()
      The o4_c1 covalent element of this monomer.
      Returns:
      FloatColumn

    • getPO5

      public FloatColumn getPO5()
      The p_o5 covalent element of this monomer.
      Returns:
      FloatColumn

    • getO5C5

      public FloatColumn getO5C5()
      The o5_c5 covalent element of this monomer.
      Returns:
      FloatColumn

    • getC5C4

      public FloatColumn getC5C4()
      The c5_c4 covalent element of this monomer.
      Returns:
      FloatColumn

    • getC3O3

      public FloatColumn getC3O3()
      The c3_o3 covalent element of this monomer.
      Returns:
      FloatColumn

    • getO3P

      public FloatColumn getO3P()
      The o3_p covalent element of this monomer.
      Returns:
      FloatColumn

    • getPO1p

      public FloatColumn getPO1p()
      The p_o1p covalent element of this monomer.
      Returns:
      FloatColumn

    • getPO2p

      public FloatColumn getPO2p()
      The p_o2p covalent element of this monomer.
      Returns:
      FloatColumn

    • getC1N91

      public FloatColumn getC1N91()
      The c1_n9_1 covalent element of this monomer.
      Returns:
      FloatColumn

    • getN1C2

      public FloatColumn getN1C2()
      The n1_c2 covalent element of this monomer.
      Returns:
      FloatColumn

    • getN1C6

      public FloatColumn getN1C6()
      The n1_c6 covalent element of this monomer.
      Returns:
      FloatColumn

    • getN9C4

      public FloatColumn getN9C4()
      The n9_c4 covalent element of this monomer.
      Returns:
      FloatColumn

    • getN9C8

      public FloatColumn getN9C8()
      The n9_c8 covalent element of this monomer.
      Returns:
      FloatColumn

    • getC1C2C3

      public FloatColumn getC1C2C3()
      The c1_c2_c3 covalent element of this monomer.
      Returns:
      FloatColumn

    • getC2C3C4

      public FloatColumn getC2C3C4()
      The c2_c3_c4 covalent element of this monomer.
      Returns:
      FloatColumn

    • getC3C4O4

      public FloatColumn getC3C4O4()
      The c3_c4_o4 covalent element of this monomer.
      Returns:
      FloatColumn

    • getC4O4C1

      public FloatColumn getC4O4C1()
      The c4_o4_c1 covalent element of this monomer.
      Returns:
      FloatColumn

    • getO4C1C2

      public FloatColumn getO4C1C2()
      The o4_c1_c2 covalent element of this monomer.
      Returns:
      FloatColumn

    • getPO5C5

      public FloatColumn getPO5C5()
      The p_o5_c5 covalent element of this monomer.
      Returns:
      FloatColumn

    • getO5C5C4

      public FloatColumn getO5C5C4()
      The o5_c5_c4 covalent element of this monomer.
      Returns:
      FloatColumn

    • getC5C4C3

      public FloatColumn getC5C4C3()
      The c5_c4_c3 covalent element of this monomer.
      Returns:
      FloatColumn

    • getC4C3O3

      public FloatColumn getC4C3O3()
      The c4_c3_o3 covalent element of this monomer.
      Returns:
      FloatColumn

    • getC3O3P

      public FloatColumn getC3O3P()
      The c3_o3_p covalent element of this monomer.
      Returns:
      FloatColumn

    • getO3PO5

      public FloatColumn getO3PO5()
      The o3_p_o5 covalent element of this monomer.
      Returns:
      FloatColumn

    • getO4C1N19

      public FloatColumn getO4C1N19()
      The o4_c1_n1_9 covalent element of this monomer.
      Returns:
      FloatColumn

    • getC1N19C24

      public FloatColumn getC1N19C24()
      The c1_n1_9_c2_4 covalent element of this monomer.
      Returns:
      FloatColumn

    • getC5C4O4

      public FloatColumn getC5C4O4()
      The c5_c4_o4 covalent element of this monomer.
      Returns:
      FloatColumn

    • getC2C3O3

      public FloatColumn getC2C3O3()
      The c2_c3_o3 covalent element of this monomer.
      Returns:
      FloatColumn

    • getO1pPO2p

      public FloatColumn getO1pPO2p()
      The o1p_p_o2p covalent element of this monomer.
      Returns:
      FloatColumn

    • getC2C1N19

      public FloatColumn getC2C1N19()
      The c2_c1_n1_9 covalent element of this monomer.
      Returns:
      FloatColumn

    • getC1N19C68

      public FloatColumn getC1N19C68()
      The c1_n1_9_c6_8 covalent element of this monomer.
      Returns:
      FloatColumn