Package org.rcsb.cif.schema.mm

Class PdbxValBond

java.lang.Object
org.rcsb.cif.schema.DelegatingCategory
org.rcsb.cif.schema.mm.PdbxValBond
All Implemented Interfaces:
Category
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class PdbxValBond
extends DelegatingCategory
The PDBX_VAL_BOND category lists the covalent bond angles in this entry deviating by greater than 6*sigma from standard values. This is a completely derived category. Do not edit.

  • Constructor Details

  • Method Details

    • createDelegate

      protected Column createDelegate​(String columnName, Column column)
      Overrides:
      createDelegate in class DelegatingCategory

    • getId

      public IntColumn getId()
      The value of _pdbx_val_bond.id must uniquely identify each item in the PDBX_VAL_BOND list. This is an integer serial number.
      Returns:
      IntColumn

    • getModelId

      public IntColumn getModelId()
      The model number for the given bond
      Returns:
      IntColumn

    • getAuthAsymId1

      public StrColumn getAuthAsymId1()
      identifier of the first of the two atom sites that define the covalent bond. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAuthAtomId1

      public StrColumn getAuthAtomId1()
      identifier of the first of the two atom sites that define the covalent bond. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAuthCompId1

      public StrColumn getAuthCompId1()
      identifier of the first of the two atom sites that define the covalent bond. This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAuthSeqId1

      public StrColumn getAuthSeqId1()
      identifier of the first of the two atom sites that define the covalent bond. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAuthAtomId2

      public StrColumn getAuthAtomId2()
      identifier of the second of the two atom sites that define the covalent bond. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAuthAsymId2

      public StrColumn getAuthAsymId2()
      identifier of the second of the two atom sites that define the covalent bond. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAuthCompId2

      public StrColumn getAuthCompId2()
      identifier of the second of the two atom sites that define the covalent bond. This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAuthSeqId2

      public StrColumn getAuthSeqId2()
      identifier of the second of the two atom sites that define the covalent bond. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAuthPDBInsertId1

      public StrColumn getAuthPDBInsertId1()
      Optional identifier of the first of the two atom sites that define the covalent bond.
      Returns:
      StrColumn

    • getAuthPDBInsertId2

      public StrColumn getAuthPDBInsertId2()
      Optional identifier of the second of the two atom sites that define the covalent bond.
      Returns:
      StrColumn

    • getLabelAltId1

      public StrColumn getLabelAltId1()
      A component of the identifier for partner 1 of the bond connection.
      Returns:
      StrColumn

    • getLabelAsymId1

      public StrColumn getLabelAsymId1()
      A component of the identifier for partner 1 of the bond connection. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getLabelAtomId1

      public StrColumn getLabelAtomId1()
      A component of the identifier for partner 1 of the bond connection. This data item is a pointer to _chem_comp_atom.atom_id in the CHEM_COMP_ATOM category.
      Returns:
      StrColumn

    • getLabelCompId1

      public StrColumn getLabelCompId1()
      A component of the identifier for partner 1 of the bond connection. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getLabelSeqId1

      public IntColumn getLabelSeqId1()
      A component of the identifier for partner 1 of the bond connection. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
      Returns:
      IntColumn

    • getLabelAltId2

      public StrColumn getLabelAltId2()
      A component of the identifier for partner 2 of the bond connection.
      Returns:
      StrColumn

    • getLabelAsymId2

      public StrColumn getLabelAsymId2()
      A component of the identifier for partner 2 of the bond connection. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getLabelAtomId2

      public StrColumn getLabelAtomId2()
      A component of the identifier for partner 2 of the bond connection. This data item is a pointer to _chem_comp_atom.atom_id in the CHEM_COMP_ATOM category.
      Returns:
      StrColumn

    • getLabelCompId2

      public StrColumn getLabelCompId2()
      A component of the identifier for partner 2 of the bond connection. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getLabelSeqId2

      public IntColumn getLabelSeqId2()
      A component of the identifier for partner 2 of the bond connection. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
      Returns:
      IntColumn

    • getBond

      public FloatColumn getBond()
      The value of the bond distance deviating by more than 6*RMSD from the standard dictionary value.
      Returns:
      FloatColumn

    • getBondDeviation

      public FloatColumn getBondDeviation()
      The value of the deviation from ideal for the defined covalent bond for the two atoms defined.
      Returns:
      FloatColumn