Package org.rcsb.cif.schema.mm

Class PdbxValidateCloseContact

java.lang.Object
org.rcsb.cif.schema.DelegatingCategory
org.rcsb.cif.schema.mm.PdbxValidateCloseContact
All Implemented Interfaces:
Category
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class PdbxValidateCloseContact
extends DelegatingCategory
Data items in the PDBX_VALIDATE_CLOSE_CONTACT category list the atoms within the entry that are in close contact with regard the distances expected from either covalent bonding or closest approach by van der Waals contacts. Contacts within the asymmetric unit are considered. For those contacts not involving hydrogen a limit of 2.2 Angstroms is used. For contacts involving a hydrogen atom a cutoff of 1.6 Angstroms is used.

  • Constructor Details

  • Method Details

    • createDelegate

      protected Column createDelegate​(String columnName, Column column)
      Overrides:
      createDelegate in class DelegatingCategory

    • getId

      public IntColumn getId()
      The value of _pdbx_validate_close_contact.id must uniquely identify each item in the PDBX_VALIDATE_CLOSE_CONTACT list. This is an integer serial number.
      Returns:
      IntColumn

    • getPDBModelNum

      public IntColumn getPDBModelNum()
      The model number for the given contact
      Returns:
      IntColumn

    • getAuthAsymId1

      public StrColumn getAuthAsymId1()
      Part of the identifier of the first of the two atom sites that define the close contact. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAuthAtomId1

      public StrColumn getAuthAtomId1()
      Part of the identifier of the first of the two atom sites that define the close contact. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAuthCompId1

      public StrColumn getAuthCompId1()
      Part of the identifier of the first of the two atom sites that define the close contact. This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAuthSeqId1

      public StrColumn getAuthSeqId1()
      Part of the identifier of the first of the two atom sites that define the close contact. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAuthAtomId2

      public StrColumn getAuthAtomId2()
      Part of the identifier of the second of the two atom sites that define the close contact. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAuthAsymId2

      public StrColumn getAuthAsymId2()
      Part of the identifier of the second of the two atom sites that define the close contact. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAuthCompId2

      public StrColumn getAuthCompId2()
      Part of the identifier of the second of the two atom sites that define the close contact. This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAuthSeqId2

      public StrColumn getAuthSeqId2()
      Part of the identifier of the second of the two atom sites that define the close contact. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getPDBInsCode1

      public StrColumn getPDBInsCode1()
      Optional identifier of the first of the two atom sites that define the close contact. This data item is a pointer to _atom_site.pdbx_PDB_ins_code in the ATOM_SITE category.
      Returns:
      StrColumn

    • getPDBInsCode2

      public StrColumn getPDBInsCode2()
      Optional identifier of the second of the two atom sites that define the close contact. This data item is a pointer to _atom_site.pdbx_PDB_ins_code in the ATOM_SITE category.
      Returns:
      StrColumn

    • getLabelAltId1

      public StrColumn getLabelAltId1()
      An optional identifier of the first of the two atoms that define the close contact. This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getLabelAltId2

      public StrColumn getLabelAltId2()
      An optional identifier of the second of the two atoms that define the close contact. This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getSymmAsXyz1

      public StrColumn getSymmAsXyz1()
      The symmetry of the first of the two atoms define the close contact. The Symmetry equivalent position is given in the 'xyz' representation.
      Returns:
      StrColumn

    • getSymmAsXyz2

      public StrColumn getSymmAsXyz2()
      The symmetry of the second of the two atoms define the close contact. The Symmetry equivalent position is given in the 'xyz' representation.
      Returns:
      StrColumn

    • getDist

      public FloatColumn getDist()
      The value of the close contact for the two atoms defined.
      Returns:
      FloatColumn