Package org.rcsb.cif.schema.mm

Class PdbxValidatePeptideOmega

java.lang.Object
org.rcsb.cif.schema.DelegatingCategory
org.rcsb.cif.schema.mm.PdbxValidatePeptideOmega
All Implemented Interfaces:
Category
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class PdbxValidatePeptideOmega
extends DelegatingCategory
Data items in the PDBX_VALIDATE_PEPTIDE_OMEGA category list the residues that contain peptide bonds deviate significantly from both cis and trans conformation. cis bonds, if any, are listed on cispep records. trans is defined as 180 +/- 30 and cis is defined as 0 +/- 30 degrees.

  • Constructor Details

  • Method Details

    • createDelegate

      protected Column createDelegate​(String columnName, Column column)
      Overrides:
      createDelegate in class DelegatingCategory

    • getId

      public IntColumn getId()
      The value of _pdbx_validate_peptide_omega.id must uniquely identify each item in the PDBX_VALIDATE_PEPTIDE_OMEGA list. This is an integer serial number.
      Returns:
      IntColumn

    • getPDBModelNum

      public IntColumn getPDBModelNum()
      The model number for the given residue This data item is a pointer to _atom_site.pdbx_PDB_model_num in the ATOM_SITE category.
      Returns:
      IntColumn

    • getAuthAsymId1

      public StrColumn getAuthAsymId1()
      Part of the identifier of the first residue in the bond This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAuthAsymId2

      public StrColumn getAuthAsymId2()
      Part of the identifier of the second residue in the bond This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAuthCompId1

      public StrColumn getAuthCompId1()
      Part of the identifier of the first residue in the bond This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAuthCompId2

      public StrColumn getAuthCompId2()
      Part of the identifier of the second residue in the bond This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAuthSeqId1

      public StrColumn getAuthSeqId1()
      Part of the identifier of the first residue in the bond This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAuthSeqId2

      public StrColumn getAuthSeqId2()
      Part of the identifier of the second residue in the bond This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getPDBInsCode1

      public StrColumn getPDBInsCode1()
      Optional identifier of the first residue in the bond This data item is a pointer to _atom_site.pdbx_PDB_ins_code in the ATOM_SITE category.
      Returns:
      StrColumn

    • getPDBInsCode2

      public StrColumn getPDBInsCode2()
      Optional identifier of the second residue in the bond This data item is a pointer to _atom_site.pdbx_PDB_ins_code in the ATOM_SITE category.
      Returns:
      StrColumn

    • getLabelAltId1

      public StrColumn getLabelAltId1()
      Optional identifier of the first residue in the torsion angle This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getLabelAltId2

      public StrColumn getLabelAltId2()
      Optional identifier of the second residue in the torsion angle This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getOmega

      public FloatColumn getOmega()
      The value of the OMEGA angle for the peptide linkage between the two defined residues
      Returns:
      FloatColumn