Package org.rcsb.cif.schema.mm

Class PdbxValidateRmsdAngle

java.lang.Object
org.rcsb.cif.schema.DelegatingCategory
org.rcsb.cif.schema.mm.PdbxValidateRmsdAngle
All Implemented Interfaces:
Category
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class PdbxValidateRmsdAngle
extends DelegatingCategory
Data items in the PDBX_VALIDATE_RMSD_ANGLE category list the the covalent bond angles found in an entry that have values which deviate from expected values by more than 6*rmsd for the particular entry from the expected standard value

  • Constructor Details

  • Method Details

    • createDelegate

      protected Column createDelegate​(String columnName, Column column)
      Overrides:
      createDelegate in class DelegatingCategory

    • getId

      public IntColumn getId()
      The value of _pdbx_validate_rmsd_angle.id must uniquely identify each item in the PDBX_VALIDATE_RMSD_ANGLE list. This is an integer serial number.
      Returns:
      IntColumn

    • getPDBModelNum

      public IntColumn getPDBModelNum()
      The model number for the given angle
      Returns:
      IntColumn

    • getAuthAsymId1

      public StrColumn getAuthAsymId1()
      Part of the identifier of the first of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAuthAtomId1

      public StrColumn getAuthAtomId1()
      Part of the identifier of the first of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAuthCompId1

      public StrColumn getAuthCompId1()
      Part of the identifier of the first of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAuthSeqId1

      public StrColumn getAuthSeqId1()
      Part of the identifier of the first of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAuthAtomId2

      public StrColumn getAuthAtomId2()
      Part of the identifier of the second of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAuthAsymId2

      public StrColumn getAuthAsymId2()
      identifier of the second of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAuthCompId2

      public StrColumn getAuthCompId2()
      Part of the identifier of the second of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAuthSeqId2

      public StrColumn getAuthSeqId2()
      Part of the identifier of the second of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAuthAtomId3

      public StrColumn getAuthAtomId3()
      Part of the identifier of the third of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAuthAsymId3

      public StrColumn getAuthAsymId3()
      Part of the identifier of the third of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAuthCompId3

      public StrColumn getAuthCompId3()
      Part of the identifier of the third of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAuthSeqId3

      public StrColumn getAuthSeqId3()
      Part of the identifier of the third of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getPDBInsCode1

      public StrColumn getPDBInsCode1()
      Optional identifier of the first of the three atom sites that define the angle. This data item is a pointer to _atom_site.pdbx_PDB_ins_code in the ATOM_SITE category.
      Returns:
      StrColumn

    • getPDBInsCode2

      public StrColumn getPDBInsCode2()
      Optional identifier of the second of the three atom sites that define the angle. This data item is a pointer to _atom_site.pdbx_PDB_ins_code in the ATOM_SITE category.
      Returns:
      StrColumn

    • getPDBInsCode3

      public StrColumn getPDBInsCode3()
      Optional identifier of the third of the three atom sites that define the angle. This data item is a pointer to _atom_site.pdbx_PDB_ins_code in the ATOM_SITE category.
      Returns:
      StrColumn

    • getLabelAltId1

      public StrColumn getLabelAltId1()
      An optional identifier of the first of the three atoms that define the covalent angle. This data item is a pointer to _atom_site.label_alt.id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getLabelAltId2

      public StrColumn getLabelAltId2()
      An optional identifier of the second of the three atoms that define the covalent angle. This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getLabelAltId3

      public StrColumn getLabelAltId3()
      An optional identifier of the third of the three atoms that define the covalent angle. This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAngleDeviation

      public FloatColumn getAngleDeviation()
      Value of the deviation (in degrees) from 6*REBI for the angle bounded by the three sites from the expected dictionary value.
      Returns:
      FloatColumn

    • getAngleValue

      public FloatColumn getAngleValue()
      The value of the bond angle
      Returns:
      FloatColumn

    • getAngleTargetValue

      public FloatColumn getAngleTargetValue()
      The target value of the bond angle
      Returns:
      FloatColumn

    • getAngleStandardDeviation

      public FloatColumn getAngleStandardDeviation()
      The uncertainty in the target value of the bond angle expressed as a standard deviation.
      Returns:
      FloatColumn

    • getLinkerFlag

      public StrColumn getLinkerFlag()
      A flag to indicate if the angle is between two residues
      Returns:
      StrColumn