Package org.rcsb.cif.schema.mm

Class PdbxValidateTorsion

java.lang.Object
org.rcsb.cif.schema.DelegatingCategory
org.rcsb.cif.schema.mm.PdbxValidateTorsion
All Implemented Interfaces:
Category
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class PdbxValidateTorsion
extends DelegatingCategory
Data items in the PDBX_VALIDATE_TORSION category list the residues with torsion angles outside the expected ramachandran regions

  • Constructor Details

  • Method Details

    • createDelegate

      protected Column createDelegate​(String columnName, Column column)
      Overrides:
      createDelegate in class DelegatingCategory

    • getId

      public IntColumn getId()
      The value of _pdbx_validate_torsion.id must uniquely identify each item in the PDBX_VALIDATE_TORSION list. This is an integer serial number.
      Returns:
      IntColumn

    • getPDBModelNum

      public IntColumn getPDBModelNum()
      The model number for the given residue This data item is a pointer to _atom_site.pdbx_PDB_model_num in the ATOM_SITE category.
      Returns:
      IntColumn

    • getAuthAsymId

      public StrColumn getAuthAsymId()
      Part of the identifier of the residue This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAuthCompId

      public StrColumn getAuthCompId()
      Part of the identifier of the residue This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAuthSeqId

      public StrColumn getAuthSeqId()
      Part of the identifier of the residue This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getPDBInsCode

      public StrColumn getPDBInsCode()
      Optional identifier of the residue This data item is a pointer to _atom_site.pdbx_PDB_ins_code in the ATOM_SITE category.
      Returns:
      StrColumn

    • getLabelAltId

      public StrColumn getLabelAltId()
      Optional identifier of the residue This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getPhi

      public FloatColumn getPhi()
      The Phi value that for the residue that lies outside normal limits (in combination with the Psi value) with regards to the rammachandran plot
      Returns:
      FloatColumn

    • getPsi

      public FloatColumn getPsi()
      The Psi value that for the residue that lies outside normal limits (in combination with the Phi value) with regards to the rammachandran plot
      Returns:
      FloatColumn